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Table 1 Overview of array features

From: New Agilent platform DNA microarrays for transcriptome analysis of Plasmodium falciparum and Plasmodium berghei for the malaria research community

  Hu et al. Array P. falciparum v7.1 8x15K P. berghei Mar2011 8x15K
Agilent Design ID (AMADID) n.a. 037237 038059
GEO Platform Accession GPL8088 GPL15130 GPL15131
Annotated Transcripts 5,092 5579 5022
Additional ncRNAs 0 257 0
Exogenous Genes 1 14 13
Total Transcripts 5093 5850 5035
Average Probes per Transcript 1.9 2.5 2.9
Genes with 1+ unique probes 4934 (92.1 %) 5752 (97.7 %) 4936 (97.4 %)
Genes with no unique probes 150 (2.8 %) 98 (1.7 %) 99 (1.9 %)
Genes without any probes 271 (5.1 %) 35 (0.6 %) 34 (0.7 %)
Unique Probes 10159 (97.5 %) 14353 (97.1 %) 14464 (98.0 %)
Non-unique Probes 257 (2.5 %) 434 (2.9 %) 299 (2.0 %)
Hand-picked 0 54 0
Repeated Probes 9 (3x3) 345 (23x15) 425 (25x17)
Random Duplicates to fill array n.a. 22 20
Agilent QC Grid n.a. 536 536
  1. Feature comparison of the Hu et al. in house printed 70mer array [39] and the P. falciparum/P. berghei 8x15K Agilent Technologies SurePrint 60mer arrays.