Table 1 Overview of array features
Hu et al. Array | P. falciparum v7.1 8x15K | P. berghei Mar2011 8x15K | |
|---|---|---|---|
Agilent Design ID (AMADID) | n.a. | 037237 | 038059 |
GEO Platform Accession | GPL8088 | GPL15130 | GPL15131 |
Annotated Transcripts | 5,092 | 5579 | 5022 |
Additional ncRNAs | 0 | 257 | 0 |
Exogenous Genes | 1 | 14 | 13 |
Total Transcripts | 5093 | 5850 | 5035 |
Average Probes per Transcript | 1.9 | 2.5 | 2.9 |
Genes with 1+ unique probes | 4934 (92.1 %) | 5752 (97.7 %) | 4936 (97.4 %) |
Genes with no unique probes | 150 (2.8 %) | 98 (1.7 %) | 99 (1.9 %) |
Genes without any probes | 271 (5.1 %) | 35 (0.6 %) | 34 (0.7 %) |
Unique Probes | 10159 (97.5 %) | 14353 (97.1 %) | 14464 (98.0 %) |
Non-unique Probes | 257 (2.5 %) | 434 (2.9 %) | 299 (2.0 %) |
Hand-picked | 0 | 54 | 0 |
Repeated Probes | 9 (3x3) | 345 (23x15) | 425 (25x17) |
Random Duplicates to fill array | n.a. | 22 | 20 |
Agilent QC Grid | n.a. | 536 | 536 |