Table 3 Structured population association test for haplotypes association between malaria and control samples

IL1B

−5839/-31/-511

TTG

49.0

42.8

0.02

0.07

TTA

0.2

0.2

TCG

2.9

0.9

TCA

1.5

1.6

CTG

0.2

1.5

CCA

46.2

53.0

IL10

−592A/-819/-1082

CCA

36.3

39.3

0.17

0.57

CCG

29.2

22.8

CTA

0.4

0.2

ATA

34.1

37.5

ATG

0

0.2

IL12B

159/458/735

CGC

31.8

36.3

0.09

0.22

CGT

1.4

4.0

CAC

0.7

0.2

CAT

2.7

2.4

AGC

11.6

10.1

AGT

14.1

15.8

AAC

0.2

0.5

AAT

37.5

30.7

IL12RB1

−1094/-641

AT

76.7

77.8

0.04

0.01

AC

0

1.4

GT

2.5

2.3

GC

20.8

18.5

TNF

−1031/-863/-857/-308/-238

TCCGG

57.8

61.4

TCCGA

1.6

0.2

TCCAG

6.6

6.7

TCTGG

11.1

9.8

TCTGA

0.5

0.2

TCTAG

0

0.2

TACGG

1.3

0.2

0.07

0.01

TATGG

1.3

3.8

CCCGG

1.6

0.2

CCCGA

0.5

1.0

CCTGG

0.8

0.2

CACAA

16.3

15.7

CACGA

0.3

0.2

CATGG

0.3

0.2

IFNGR1

−56 /611

TA

32.7

36.1

0.28

0.57

TG

28.1

25.9

CA

38.0

37.7

CG

1.2

0.3