From: Local population structure of Plasmodium: impact on malaria control and elimination
Locus | Chr | Core sequence* | Size range | N. of Alleles | %MAF | HE | SD |
---|---|---|---|---|---|---|---|
Dinucleotides | |||||||
2.21 | 2 | AC | 92-104 | 6 | 7.07 | 0.73 | 0.02 |
4.271 | 4 | AT | 86-122 | 7 | 9.38 | 0.30 | 0.06 |
6.34 | 6 | AC | 138-158 | 9 | 7.07 | 0.79 | 0.03 |
7.67 | 7 | AT | 98-124 | 11 | 13.64 | 0.76 | 0.03 |
8.332 | 8 | AT | 216-260 | 10 | 6.12 | 0.77 | 0.03 |
10.29 | 10 | AT | 110-130 | 7 | 5.10 | 0.69 | 0.04 |
12.335 | 12 | AT | 156-180 | 8 | 6.06 | 0.71 | 0.04 |
14.185 | 14 | AT | 266-289 | 9 | 5.05 | 0.61 | 0.05 |
Trinucleotides | |||||||
MS1 | 3 | (GAA)11 | 231-246 | 6 | 2.02 | 0.70 | 0.03 |
MS3 | 4 | (GAA)11 | 184-193 | 4 | 0 | 0.54 | 0.05 |
MS15 | 5 | (TCT)10 | 236-284 | 10 | 2.04 | 0.77 | 0.03 |
MS4 | 6 | (AGT)18 | 189-210 | 6 | 3.03 | 0.53 | 0.06 |
MS9 | 8 | (GGA)18 | 155-176 | 8 | 8.16 | 0.77 | 0.03 |
MS7 | 12 | (GAA)9 | 145-157 | 4 | 4.08 | 0.52 | 0.03 |
Imperfect | |||||||
MS12 | 5 | (TTC)10(TGC)4 | 185-269 | 9 | 6.06 | 0.70 | 0.04 |
MS2 | 6 | (TAAA)2TATA(TAAA)6TATA(TAAA)19 | 181-285 | 13 | 12.12 | 0.82 | 0.03 |
MS5 | 6 | CCTCTT(CCT)11 | 172-187 | 5 | 5.10 | 0.58 | 0.04 |
MS16 | 9 | (ACA)9GCA(ACA)3GCA(ACA)7GCA(ACA)3GCAATC | 238-400 | 14 | 12.79 | 0.73 | 0.04 |
MS20 | 10 | (GAA)11GAG(GAA)13(CAA)4 GAA(CAA)5 | 193-259 | 16 | 19.39 | 0.80 | 0.03 |
MS6 | 11 | (TCC)2(TCT)3(CCT)2(TCC)2 GCTTCT(TCC)10 | 211-244 | 6 | 2.08 | 0.74 | 0.03 |
MS8 | 12 | (CAG)2(CAA)11 | 201-285 | 14 | 17.78 | 0.82 | 0.02 |
MS10 | 13 | GAA(GGA)2AGA(GGA)9AGA(GGA)4AGAGGAAGA(GGA3) | 189-249 | 12 | 13.13 | 0.72 | 0.03 |