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Table 2 Characterization of the P. vivax microsatellite loci in all samples analyzed from Venezuela

From: Local population structure of Plasmodium: impact on malaria control and elimination

Locus

Chr

Core sequence*

Size range

N. of Alleles

%MAF

HE

SD

Dinucleotides

2.21

2

AC

92-104

6

7.07

0.73

0.02

4.271

4

AT

86-122

7

9.38

0.30

0.06

6.34

6

AC

138-158

9

7.07

0.79

0.03

7.67

7

AT

98-124

11

13.64

0.76

0.03

8.332

8

AT

216-260

10

6.12

0.77

0.03

10.29

10

AT

110-130

7

5.10

0.69

0.04

12.335

12

AT

156-180

8

6.06

0.71

0.04

14.185

14

AT

266-289

9

5.05

0.61

0.05

Trinucleotides

MS1

3

(GAA)11

231-246

6

2.02

0.70

0.03

MS3

4

(GAA)11

184-193

4

0

0.54

0.05

MS15

5

(TCT)10

236-284

10

2.04

0.77

0.03

MS4

6

(AGT)18

189-210

6

3.03

0.53

0.06

MS9

8

(GGA)18

155-176

8

8.16

0.77

0.03

MS7

12

(GAA)9

145-157

4

4.08

0.52

0.03

Imperfect

MS12

5

(TTC)10(TGC)4

185-269

9

6.06

0.70

0.04

MS2

6

(TAAA)2TATA(TAAA)6TATA(TAAA)19

181-285

13

12.12

0.82

0.03

MS5

6

CCTCTT(CCT)11

172-187

5

5.10

0.58

0.04

MS16

9

(ACA)9GCA(ACA)3GCA(ACA)7GCA(ACA)3GCAATC

238-400

14

12.79

0.73

0.04

MS20

10

(GAA)11GAG(GAA)13(CAA)4 GAA(CAA)5

193-259

16

19.39

0.80

0.03

MS6

11

(TCC)2(TCT)3(CCT)2(TCC)2 GCTTCT(TCC)10

211-244

6

2.08

0.74

0.03

MS8

12

(CAG)2(CAA)11

201-285

14

17.78

0.82

0.02

MS10

13

GAA(GGA)2AGA(GGA)9AGA(GGA)4AGAGGAAGA(GGA3)

189-249

12

13.13

0.72

0.03

  1. * Descibed by Imwong et al., 2006 [31] and Karunaweera et al., 2008 [32].