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Table 1 DNA sequence polymorphisms in each domain of PvMSP-3β among Korean isolates

From: Polymorphic patterns of the merozoite surface protein-3β in Korean isolates of Plasmodium vivax

Fragment

Segregating sites (S)

Singleton variable sites

Parsimony informative sites

Total no. of mutations

K

H

Hd ± SD

π ± SD

dN-dS

Tajima’s D

Fu and Li’s D

Fu and Li’s F

N-terminal domain

187

0

187

194

73.296

5

0.773 ± 0.028

0.07271 ± 0.00240

1.286

3.15439 (P < 0.01)

2.53522 (P < 0.02)

3.36192 (P < 0.02)

Insert A

0

0

0

0

0

1

0

0

0

0

0

0

C-terminal domain

96

0

96

100

32.920

5

0.733 ± 0.028

0.03040 ± 0.00179

0.455

2.27420 (P < 0.05)

2.39279 (P < 0.02)

2.81226 (P < 0.02)

  1. K, average number of pairwise nucleotide differences; H, number of haplotypes; Hd, haplotype diversity; π, observed average pairwise nucleotide diversity; dN, rate of non-synonymous mutations; dS, rate of synonymous mutations.