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Table 2 G6PD polymorphisms and minor allele frequencies

From: Glucose-6-phosphate dehydrogenase polymorphisms and susceptibility to mild malaria in Dogon and Fulani, Mali

SNP Position Major/Minor allele Dogon Fulani Fst
(n = 375) (n = 337)  
rs915941 153626649 A/C 0.542 0.352 0.051
rs915942 153626738 G/A 0.435 0.277 0.043
rs762513 153675171 A/G 0.203 0.087 0.040
rs61042368 153755336 G/A 0.152 0.069 0.019
rs12389569 153757734 G/A 0.097 0.209 0.033
b36_153413623** 153760429 G/A 0.011 0.010 0.007
rs2230036 153760953 C/T 0.147 0.068 0.018
G6PD968 153761240 T/C 0.000 0.061 0.041
rs73573478 153761564 G/A 0.155 0.074 0.017
rs2515905 153762075 G/A 0.020 0.038 0.004
rs5986875 153762392 G/A 0.009 0.022 0.008
rs1050829 (376) 153763492 A/G 0.353 0.358 0.003
rs1050828 (202) 153764217 G/A 0.079 0.006 0.034
rs762516 153764663 C/T 0.105 0.112 0.001
rs73641103** 153769889 G/A 0.003 0.000 0.001
b36_153424232** 153771038 T/C 0.004 0.001 0.001
b36_153426354 153773160 A/C 0.027 0.007 0.006
b36_153426720** 153773526 A/G 0.004 0.003 0.004
rs5986992 153776107 C/A 0.000 0.022 0.017
rs5986997** 153827549 C/T 0.003 0.000 0.002
rs4898389 153827637 G/A 0.025 0.312 0.184
rs5986877 153828269 G/C 0.041 0.303 0.154
rs7879049 153829693 A/G 0.512 0.260 0.069
rs7053878 153834100 T/A 0.040 0.064 0.007
rs60030796 153836171 A/G 0.100 0.024 0.034
  1. The following SNPs are monomorphic across both ethnic groups: rs33950507G, b36_153411172C, b36_153412566C, b36_153412620C, b36_153412734G, b36_153412861G, b36_153413455A, rs72554665C, b36_153413799G, b36_153414077G, b36_153414378G, b36_153414531C, b36_153414709C, b36_153414937T, b36_153415014T, 680G, b36_153415799G, rs5030868G, rs5030872A (542A), b36_153415904C, b36_153416019C, b36_153416656G, b36_153416679A, b36_153417405A, b36_153417417A, b36_153426313G, b36_153427408T, b36_153427466T, b36_153429686G, rs5986997C.
  2. **SNPs with minor allele frequencies less than 1% in each group, and omitted from further analysis.
  3. Bolded are the well known 202, 376, 542, 680 and 968 polymorphisms.