
N
_{e}

Heterozygosity tests


SMM

TPM (10%)

TPM (20%)


An. arabiensis

Adults

32.8

9

9

9

[15.1253.0]

<0.001

0.002

0.002

Larvae

88.3

10

10

10

[54.7166.4]

<0.001

<0.001

<0.001

An. coluzzii

Larvae

38.5

5

5

2

[23.286.7]

0.278

0.615

0.884

An. gambiae

Adults

192.4

9

8

8

[84.3∞]

<0.001

0.003

0.007

Larvae

114.8

9

7

6

[61.7415.3]

0.001

0.012

0.097

 N_{e:} linkage disequilibriumbased estimate of effective population size and Jackknife 95% confidence interval in square brackets. Heterozygosity tests: upper values are the number of loci (out of 10) in which H_{e} < H_{eq}; lower values are the Pvalue for the corresponding onetailed Wilcoxon test. SMM: stepwise mutation model; TPM (10%): twophased model with 10% of indels greater than one repeat; TPM (20%): twophased model with 20% of indels greater than one repeat.