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Table 1 Measures of DNA sequence polymorphisms and tests of neutrality at domain I of AMA 1 among Indian P. falciparum populations

From: Sequence diversity and natural selection at domain I of the apical membrane antigen 1 among Indian Plasmodium falciparum populations

Study areas (n = 157) Segregating sites (S) Singleton variable sites Parsimony informative sites Total no. of mutations K H Hd ± S.D π ± S.D dN-dS ± S.E Tajima's D
Assam (n = 28) 34 6 28 38 10.97 20 0.971 ± 0.018 0.0240 ± 0.0009 0.029 ± 0.006 0.461
Orissa (n = 35) 35 5 30 40 9.96 23 0.948 ± 0.025 0.0218 ± 0.0015 0.027 ± 0.005 0.094
A & N (n = 40) 34 6 28 35 10.34 18 0.926 ± 0.022 0.0226 ± 0.0008 0.027 ± 0.007 0.895
UP (n = 36) 24 6 18 26 7.31 10 0.748 ± 0.066 0.0160 ± 0.0014 0.020 ± 0.005 0.576
Goa (n = 18) 19 1 18 20 8.07 7 0.882 ± 0.039 0.0177 ± 0.0011 0.023 ± 0.006 1.518
Total (n = 157) 44 8 36   10.13 57 0.948 ± 0.010 0.0222 ± 0.0005 0.027 ± 0.006 0.429
  1. n; number of isolates, S; Number of segregating (polymorphic/variable) sites; K; Average number of pairwise nucleotide differences, H; Number of haplotypes, Hd; Haplotype diversity; π; Observed average pairwise nucleotide diversity; dN-dS; rate of non-synonymous mutations minus rate of synonymous mutations; D; Tajima's D test statistics.