Table 2 SINE200 primer list.
Locus | SINE200 coordinate | Primer pair (forward/reverse) | Product size (bp) | Annotated genes (in 20 Kb) |
|---|---|---|---|---|
S200 X6.1 | Chromosome X: | 5'-TCGCCTTAGACCTTGCGTTA-3' | 479 | AGAP001076 |
22951445–22951671 | 5'-CGCTTCAAGAATTCGAGATAC-3' | (CYP4G16 gene) | ||
S200 X6.2 | Chromosome X: | 5'-TCGGGCCAATATAACACAC-3' | 588 | AGAP001094 |
24225524–24225731 | 5'-AGGCGCCATGTACGTAACC-3' | |||
S200 2L20A.1 | Chromosome 2L: | 5'-TGCCCTGTTCAAGATTTCAT-3' | 564 | none |
641051–641259 | 5'-GGTCACTCACGCATACCGTCT-3' | |||
S200 2L20A.2 | Chromosome 2L: | 5'-ACGCCAGACGGTTTCATATC-3' | 611 | none |
977287–977497 | 5'-CCTATCTTTAATTTATATTCGC-3' | |||
S200 2L20B.1 | Chromosome 2L: | 5'-AACCTTACAATACACAAGAAC-3' | 495 | AGAP004725 |
2796669–2796889 | 5'-CAGGAAAACGACTACTCGAAC-3' | AGAP004726 | ||
S200 2L20B.2 | Chromosome 2L: | 5'-CGCGTTGATTAATAATCCCAC-3' | 483 | none |
1191908–1192118 | 5'-CCAGTCTCTGGACATGCTG-3' | |||
S200 2L20B.3 | Chromosome 2L: | 5'-TTATCTGCGCGTGAGTGG-3' | 515 | Intron of AGAP004691 |
1276754–1276921 | 5'-ATACCGCCTAAACGCATG-3' | (LIM gene) | ||
S200 2R12D | Chromosome 2R: | 5'-AGAATGAATTGTATGGAACAGG-3' | 535 | AGAP002640 |
24868905–24869106 | 5'-CTATTAAATGTGTCTCGCTCG-3' | (GPR-OR38 gene) |