From: Genetic structure of Plasmodium vivax and Plasmodium falciparum in the Bannu district of Pakistan
Gene (PCR reaction)§ | Primers* | PCR cycling conditions** | Reference |
---|---|---|---|
P. vivax | Â | Â | Â |
Pvmsp-3α (N1) | F: 5'-CAGCAGACACCATTTAAGG-3' | 95°C 3 min/[94°C 30 s, 54°C 30 s, 68°C 2.5 min] × 35 cycles, 68°C 5 min | [19] |
 | R: 5'-CCGTTTGTTGATTAGTTGC-3' |  |  |
Pvmsp-3α (N2) | F: 5'-GACCAGTGTGATACCATTAACC-3' | 95°C 3 min/[94°C 30 s, 55°C 30 s, 68°C 2.5 min] × 30 cycles, 68°C 5 min | [19] |
 | R: 5'-ATACTGGTTCTTCGTCTTCAGG-3' |  |  |
Pvmsp-3β (N1) | F: 5'-GTATTCTTCGCAACACTC-3' | 95°C 3 min/[94°C 30 s, 54°C 30 s, 68°C 2.5 min] × 35 cycles, 68°C 5 min | [20] |
 | R: 5'-CTTCTGATGTTATTTCCAG-3' |  |  |
Pvmsp-3β (N2) | F: 5'-CGAGGGGCGAAATTGTAAACC-3' | 95°C 3 min/[94°C 30 s, 55°C 30 s, 68°C 2.5 min] × 30 cycles, 68°C 5 min | [20] |
 | R: 5'-GCTGCTTCTTTTGCAAAGG-3' |  |  |
P. falciparum | Â | Â | Â |
Pfmsp-1 (N1) | F: 5'-CTAGAAGCTTTAGAAGATGCAGTATTG-3' | 95°C 5 min/[94°C 30 s, 55°C 30 s, 72°C 1 min] × 35 cycles, 72°C 5 min | [17] |
 | R: 5'-CTTAAATAGTATTCTAATTCAAGTGGATCA-3' |  |  |
K1 family (N2) | F: 5'-AAATGAAGAAGAAATTACTACAAAAGGTGC-3' | 95°C 5 min/[94°C 30 s, 56°C 30 s, 72°C 45 s] × 30 cycles, 72°C 5 min | [17] |
 | R: 5'-GCTTGCATCAGCTGGAGGGCTTGCACCAGA-3' |  |  |
MAD20 family (N2) | F: 5 '-AAATGAAGGAACAAGTGGAACAGCTGTTAC-3 ' | 95°C 5 min/[94°C 30 s, 56°C 30 s, 72°C 45 s] × 30 cycles, 72°C 5 min | [17] |
 | R: 5 '-ATCTGAAGGATTTGTACGTCTTGAATTACC-3 ' |  |  |
RO33 family (N2) | F: 5 '-TAAAGGATGGAGCAAATACTCAAGTTGTTG-3 ' | 95°C 5 min/[94°C 30 s, 56°C 30 s, 72°C 45 s] × 30 cycles, 72°C 5 min | [17] |
 | R: 5 '-CATCTGAAGGATTTGCAGCACCTGGAGATC-3 ' |  |  |
Pfmsp-2 (N1) | F: 5 '-ATGAAGGTAATTAAAACATTGTCTATTATA-3 ' | 95°C 5 min/[94°C 30 s, 56°C 30 s, 72°C 45 s] × 30 cycles, 72°C 5 min | [17] |
 | R: 5'-CTTTGTTACCATCGGTACATTCTT-3' |  |  |
FC27 family (N2) | F: 5'-AATACTAAGAGTGTAGGTGCARATGCTCCA-3' | 95°C 5 min/[94°C 30 s, 56°C 30 s, 72°C 45 s] × 30 cycles, 72°C 5 min | [17] |
 | R: 5 '-TTTTATTTGGTGCATTGCCAGAACTTGAAC-3 ' |  |  |
3D7/IC family (N2) | F: 5 '-AGAAGTATGGCAGAAAGTAAKCCTYCTACT-3 ' | 95°C 5 min/[94°C 30 s, 56°C 30 s, 72°C 45 s] × 30 cycles, 72°C 5 min | [17] |
 | R: 5 '-GATTGTAATTCGGGGGATTCAGTTTGTTCG-3 ' |  |  |