Table 5 Parameter estimates under five models of variable ω's among sites using PAML software.
From: Complete mtDNA genomes of Anopheles darlingi and an approach to anopheline divergence time
| Â | Â | Parameters estimates* | ||||
|---|---|---|---|---|---|---|
Gene | Codon | M0 (one-ratio) | M1a (neutral) | M2a (selection) | M7 (β) | M8 (β&ω) |
NAD1 | 314 | ω = 0.00843 | p0 = 0.986, ω0 = 0.005 p1 = 0.013, ω1 = 1 | p0 = 0.986, ω0 = 0.005 p1 = 0.013, ω1 = 1; p2 = 0, ω2 = 16.720 | p = 0.040 q = 2.433 | p0 = 0.992, p1 = 0.007 p = 0.047, q = 4.310 ω = 1 |
NAD2 | 341 | ω = 0.00705 | p0 = 0.972, ω0 = 0.005 p1 = 0.027, ω1 = 1 | p0 = 0.972, ω0 = 0.005 p1 = 0.027, ω1 = 1 p2 = 0, ω2 = 33.683 | p = 0.166 q = 17.011 | p0 = 0.099, p1 = 0.003 p = 0.179, q = 19.695 ω = 1 |
NAD3 | 117 | ω = 0.00583 | p0 = 0.995, ω0 = 0.005 p1 = 0.004, ω1 = 1 | p0 = 0.995, ω0 = 0.005 p1 = 0.002, ω1 = 1 p2 = 0.001, ω2 = 1 | p = 0.17328 q = 24.05246 | p0 = 0.999, p1 = 0.00001 p = 0.173, q = 24.053 ω = 1 |
NAD4 | 447 | ω = 0.00295 | p0 = 0.967, ω0 = 0.007 p1 = 0.032, ω1 = 1 | p0 = 0.967, ω0 = 0 p1 = 0.032, ω1 = 1 p2 = 0, ω2 = 1 | p = 0.12561 q = 7.98102 | p0 = 0.999, p1 = 0.00001 p = 0.125, q = 7.983 ω = 1 |
NAD4L | 99 | ω = 0.00168 | p0 = 0.980, ω0 = 0 p1 = 0.019, ω1 = 1 | p0 = 0.98, ω0 = 0 p1 = 0.019, ω1 = 1 p2 = 0, ω2 = 88.23 | p = 0.02510 q = 4.53382 | p0 = 0.999, p1 = 0.00001 p = 0.025, q = 4.534 ω = 23.181 |
NAD5 | 576 | ω = 0.01018 | p0 = 0.959, ω0 = 0.006 p1 = 0.040, ω1 = 1 | p0 = 0.959, ω0 = 0,006 p1 = 0.04, ω1 = 1 p2 = 0, ω2 = 9.342 | p = 0.09489 q = 5.44623 | p0 = 0.998, p1 = 0.001 p = 0.096, q = 5.702 ω = 1 |
NAD6 | 174 | ω = 0.00034 | p0 = 0.922, ω0 = 0 p1 = 0.077, ω1 = 1 | p0 = 0.922, ω0 = 0 p1 = 0.075, ω1 = 1 p2 = 0.002, ω2 = 1 | p = 0.11857 q = 99.0 | p0 = 0.999, p1 = 0.00001 p = 0.118, q = 99 ω = 1.915 |
ATP6 | 222 | ω = 0.01750 | p0 = 0.966, ω0 = 0.012, p1 = 0.033, ω1 = 1 | p0 = 0.966, ω0 = 0.01 p1 = 0.013, ω1 = 1 p2 = 0.02 , ω2 = 1 | p = 0.12790 q = 5.29443 | p0 = 0.999, p1 = 0.00001 p = 0.127, q = 5.295 ω = 1 |
ATP8 | 53 | ω = 0.03705 | p0 = 0.999, ω0 = 0.037 p1 = 0.000, ω1 = 1 | p0 = 1, ω0 = 0.037 p1 = 0, ω1 = 1 p2 = 0, ω2 = 1 | p = 0.63306 q = 15.13648 | p0 = 0.999, p1 = 0.00001 p = 0.633, q = 15.138 ω = 1 |
COI | 512 | ω = 0.00343 | p0 = 0.997, ω0 = 0.003 p1 = 0.002, ω1 = 1 | p0 = 0.997, ω0 = 0.003 p1 = 0, ω1 = 1 p2 = 0.002, ω2 = 1 | p = 0.00827 q = 0.29316 | p0 = 0.999, p1 = 0.00001 p = 0.011, q = 0.524 ω = 1 |
COII | 228 | ω = 0.00761 | p0 = 0.999, ω0 = 0.007 p1 = 0, ω1 = 1 | p0 = 1, ω0 = 0.007 p1 = 0, ω1 = 1 p2 = 0, ω2 = 31.418 | p = 0.05952 q = 5.03366 | p0 = 0.999, p1 = 0.00001 p = 0.059, q = 5.033 ω = 1 |
COIII | 262 | ω = 0.00865 | p0 = 0.984, ω0 = 0.005 p1 = 0.015, ω1 = 1 | p0 = 0.984, ω0 = 0.005 p1 = 0.015, ω1 = 1 p2 = 0, ω2 = 68.73 | p = 0.01261 q = 0.42587 | p0 = 0.999, p1 = 0.00001 p = 0.0125, q = 0.422 ω = 2.891 |
CYTB | 378 | ω = 0.00516 | p0 = 0.988, ω0 = 0.002 p1 = 0.011, ω1 = 1 | p0 = 0.988, ω0 = 0.002 p1 = 0, ω1 = 1 p2 = 0.01, ω2 = 1 | p = 0.01168 q = 0.44511 | p0 = 0.994, p1 = 0.0051 p = 0.012, q = 0.583 ω = 1 |