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Table 1 Single Nucleotide polymorphisms selected for analysis

From: G6PD gene variants and its association with malaria in a Sri Lankan population

  rs number Chromosome Ancestral: Alternate allele Function
   Position (MAF)
1 rs766420 153554404 C: G (0.491) Intron variant
2 rs915941 153626649 C: A (0.12) 5′ UTR variant
3 rs915942 153626738 G :A (0.119) Splice region variant
4 rs28470352 153753490 T :A (0.0) Intergenic variant
5 rs61042368 153755336 G :A (0.001) Downstream gene variant
6 rs12389569 153757734 G :A (0.001) Downstream gene variant
7 NT_011726.13_4578452 153757978 C:G (0.0)  
8 rs188196644 153759426 C :A (0.0) Downstream gene variant
9 NT_011726.13_4580014 153759540 G: A (0.0)  
10 rs181015082 153759667 G : A (0.0) 3′ UTR variant
11 CM973154 (Bangkok_Noi) 153760261 A: C (0.0)  
12 rs77214077 153760429 G: A (0.0) Synonymous variant
13 rs72554665 (Canton) 153760484 C: A (0.0) Missense variant
14 rs2071429 153760508 G: A (0.452) Intron variant
15 CM920290 (Union) 153760605 G: A (0.0)  
16 rs2230037 153760654 G: A (0.413) Synonymous variant
17 CM067413 153760883 G: C (0.0)  
18 rs2230036 153760953 C: T (0.001) Synonymous variant
19 rs137852342 (Chinese-V) 153761184 G: A (0.0) Missense variant
20 rs76723693 (Betica) 153761240 A: G (0.0) Missense variant
21 rs137852327 (Viangchan) 153761337 C: T (0.0) Missense variant
22 rs183394670 (nt3042) 153761515 C: T (0.0) Intron variant
23 rs73573478 153761564 G: A (0.002) Non coding exon variant
24 rs5986990 153761628 G: A (0.0) Non coding exon variant
25 NT_011726.13_4582217 153761743 T: C (0.0)  
26 rs2515905 153762075 G: A (0.0) Intron variant
27 rs137852328 (Mexico city) 153762340 C: T (0.0) Missense variant
28 rs5986875 153762392 G: A (0.001) Non coding exon variant
29 rs137852330 (Vancouver2) 153762605 G: A (0.0) Missense variant
30 rs5030868 (Mediterranean) 153762634 G: A (0.0) Missense variant
31 rs5030872 (Santa Maria) 153762655 T: A (0.0) Missense variant
32 rs137852314 (Mahidol) 153762710 C: T (0.0) Missense variant
33 rs2515904 153762771 G: C (0.0) Intron variant
34 NT_011726.13_4583299 153762825 C: T (0.0)  
35 CM970547 (Valladolod) 153763462 G: A (0.0)  
36 rs78365220 (Vanua Lava) 153763485 A: G (0.0) Missense variant
37 rs1050829 153763492 T: C (0.0) Missense variant
38 rs137852349 (Namoru) 153764211 A: G (0.0) Missense variant
39 rs1050828 153764217 C :T (0.0) Missense variant
40 CM052878 (Songklangarind) 153764223 A: T (0.0)  
41 rs762516 153764663 C: T (0.0) Intron variant
42 rs73641103 153769889 G: A (0.0) Intron variant
43 NT_011726.13_4591512 153771038 T: C (0.0)  
44 rs113492957 153773062 C: T (0.001) Intron variant
45 NT_011726.13_4593593 153773119 G: A (0.0)  
46 NT_011726.13_4593634 153773160 A: C (0.0)  
47 rs145036913 153773526 A: G (0.001) Intron variant
48 NT_011726.13_4594688 153774214 T: C (0.0)  
49 CM950495 (Honiara) 153774272 T: C (0.0)  
50 rs5986992 153776107 C: A (0.001) 5′ UTR variant
51 NT_011726.13_4596966 153776492 G: T (0.0)  
52 rs5986997 153827549 C: T (0.0) Intergenic variant
53 rs4898389 153827637 G: A (0.449) Intergenic variant
54 rs5986877 153828269 G: C (0.452) Intergenic variant
55 rs7879049 153829693 G: A (0.404) Upstream gene variant
56 rs7053878 153834100 A: T (0.113) Upstream gene variant
57 rs60030796 153836171 A: G (0.0) Downstream gene variant
  1. Fifty seven SNPs selected for assay are listed. These include SNPs in the G6PD gene, SNPs in the immediate downstream of the G6PD gene and SNPs known to have long range LD with the G6PD gene: rs numbers/ or primary IDs assigned for each SNP is indicated (GRch37, Ensembl release 68). Chromosome position, minor allele frequency (MAF) and the function of the polymorphic markers are also stated. Minor allele of each SNP is italicized.