Table 1 Single Nucleotide polymorphisms selected for analysis
From: G6PD gene variants and its association with malaria in a Sri Lankan population
rs number | Chromosome | Ancestral: Alternate allele | Function | |
|---|---|---|---|---|
Position | (MAF) | |||
1 | rs766420 | 153554404 | C: G (0.491) | Intron variant |
2 | rs915941 | 153626649 | C: A (0.12) | 5′ UTR variant |
3 | rs915942 | 153626738 | G :A (0.119) | Splice region variant |
4 | rs28470352 | 153753490 | T :A (0.0) | Intergenic variant |
5 | rs61042368 | 153755336 | G :A (0.001) | Downstream gene variant |
6 | rs12389569 | 153757734 | G :A (0.001) | Downstream gene variant |
7 | NT_011726.13_4578452 | 153757978 | C:G (0.0) | |
8 | rs188196644 | 153759426 | C :A (0.0) | Downstream gene variant |
9 | NT_011726.13_4580014 | 153759540 | G: A (0.0) | |
10 | rs181015082 | 153759667 | G : A (0.0) | 3′ UTR variant |
11 | CM973154 (Bangkok_Noi) | 153760261 | A: C (0.0) | |
12 | rs77214077 | 153760429 | G: A (0.0) | Synonymous variant |
13 | rs72554665 (Canton) | 153760484 | C: A (0.0) | Missense variant |
14 | rs2071429 | 153760508 | G: A (0.452) | Intron variant |
15 | CM920290 (Union) | 153760605 | G: A (0.0) | |
16 | rs2230037 | 153760654 | G: A (0.413) | Synonymous variant |
17 | CM067413 | 153760883 | G: C (0.0) | |
18 | rs2230036 | 153760953 | C: T (0.001) | Synonymous variant |
19 | rs137852342 (Chinese-V) | 153761184 | G: A (0.0) | Missense variant |
20 | rs76723693 (Betica) | 153761240 | A: G (0.0) | Missense variant |
21 | rs137852327 (Viangchan) | 153761337 | C: T (0.0) | Missense variant |
22 | rs183394670 (nt3042) | 153761515 | C: T (0.0) | Intron variant |
23 | rs73573478 | 153761564 | G: A (0.002) | Non coding exon variant |
24 | rs5986990 | 153761628 | G: A (0.0) | Non coding exon variant |
25 | NT_011726.13_4582217 | 153761743 | T: C (0.0) | |
26 | rs2515905 | 153762075 | G: A (0.0) | Intron variant |
27 | rs137852328 (Mexico city) | 153762340 | C: T (0.0) | Missense variant |
28 | rs5986875 | 153762392 | G: A (0.001) | Non coding exon variant |
29 | rs137852330 (Vancouver2) | 153762605 | G: A (0.0) | Missense variant |
30 | rs5030868 (Mediterranean) | 153762634 | G: A (0.0) | Missense variant |
31 | rs5030872 (Santa Maria) | 153762655 | T: A (0.0) | Missense variant |
32 | rs137852314 (Mahidol) | 153762710 | C: T (0.0) | Missense variant |
33 | rs2515904 | 153762771 | G: C (0.0) | Intron variant |
34 | NT_011726.13_4583299 | 153762825 | C: T (0.0) | |
35 | CM970547 (Valladolod) | 153763462 | G: A (0.0) | |
36 | rs78365220 (Vanua Lava) | 153763485 | A: G (0.0) | Missense variant |
37 | rs1050829 | 153763492 | T: C (0.0) | Missense variant |
38 | rs137852349 (Namoru) | 153764211 | A: G (0.0) | Missense variant |
39 | rs1050828 | 153764217 | C :T (0.0) | Missense variant |
40 | CM052878 (Songklangarind) | 153764223 | A: T (0.0) | |
41 | rs762516 | 153764663 | C: T (0.0) | Intron variant |
42 | rs73641103 | 153769889 | G: A (0.0) | Intron variant |
43 | NT_011726.13_4591512 | 153771038 | T: C (0.0) | |
44 | rs113492957 | 153773062 | C: T (0.001) | Intron variant |
45 | NT_011726.13_4593593 | 153773119 | G: A (0.0) | |
46 | NT_011726.13_4593634 | 153773160 | A: C (0.0) | |
47 | rs145036913 | 153773526 | A: G (0.001) | Intron variant |
48 | NT_011726.13_4594688 | 153774214 | T: C (0.0) | |
49 | CM950495 (Honiara) | 153774272 | T: C (0.0) | |
50 | rs5986992 | 153776107 | C: A (0.001) | 5′ UTR variant |
51 | NT_011726.13_4596966 | 153776492 | G: T (0.0) | |
52 | rs5986997 | 153827549 | C: T (0.0) | Intergenic variant |
53 | rs4898389 | 153827637 | G: A (0.449) | Intergenic variant |
54 | rs5986877 | 153828269 | G: C (0.452) | Intergenic variant |
55 | rs7879049 | 153829693 | G: A (0.404) | Upstream gene variant |
56 | rs7053878 | 153834100 | A: T (0.113) | Upstream gene variant |
57 | rs60030796 | 153836171 | A: G (0.0) | Downstream gene variant |