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Table 3 Haplotype frequencies

From: G6PD gene variants and its association with malaria in a Sri Lankan population

Block 1 SNPs   Frequency of the haplotype
  rs915941 rs915942 population Group A Group B Males Females Males Group B    
       Group A Group A Group B Females    
Haplotypes A G 0.880 0.890 0.870 - 0.870 0.878 0.871    
C A 0.119 0.110 0.124 - 0.120 0.122 0.126    
Block 2 SNPs      Frequency of the haplotype
  rs2071429 rs2230037 rs4898389 rs5986877 rs7879049 Population (0.64) Group A (0.73) Group B (0.77) Males Group A (N/R) Females Group A (0.77) Males Group B (0.76) Females Group B (0.48)
Haplotypes A G A C A 0.545 0.553 0.540 0.475 0.540 0.585 0.516
  G A G G G 0.402 0.394 0.407 0.475 0.365 0.364 0.431
  G G G G A 0.034 0.033 0.034 0.013 0.041 0.028 0.038
  1. Population frequencies of the G6PD haplotypes (>1%) are presented with the minor alleles of each SNP is italicized. Haplotype analysis was conducted for the five markers with the alternate allele, in which four were in linkage disequilibrium. The identified haplotype blocks for the entire population, Group A, Group B, Males/ Females in Group A and B are tabulated below. Recombination rates of the two haplotype blocks are indicated within brackets (N/R = Not Relevant).