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Table 1 Forward and reverse primers, hybridization temperature and MgCL2 concentration used for polymerase chain reaction and sequence analysis

From: Absence of correlation between ex vivo susceptibility to doxycycline and pfteQpfmdt gene polymorphism in French Guiana

Gene

Forward Primer

Reverse Primer

Tm; [MgCl2]

PftetQ

5′-ATGTTTAAAAGAGTTTACGTATATAAAAATTC

5′-GAAATGTTCATAAGAAATTGGTATATTATT

50°C; 3 mM

5′-TTGTATGATAAATCCTAAACCAGATA

5′-TTCATCGTCCTTCTCACAAATTATAT

50°C; 3 mM

5′-TCACGACAAATGTGCTAGATAC

5′-ATCATCATTTGTGGTGGATATATACAT

55°C; 3 mM

5′-TTAAATATTTCAGATAACCTGGATAAAGA

5′-TTGGGATACACTTTATATATTAACACTTTT

55°C; 3 mM

PfssurRNA

5′-AAAGAATATCAAAGGCGAAAGC

5′-ACCCTTATCAAGAGTATGTTTTAACC

60°C; 4 mM

5′-CTACTAGGGTATCTAATCCTATTTGCTA

5′-GATAGTAGTTCAATTCTACTTATTTCCAT

60°C; 2 mM

PflsurRNA

5′-TATAGACCCGAAATCAAATGATCTAATT

5′-TTTGGACCGTTATAGATACAGCCG

60°C; 3 mM

5′-ACATCTGCCCAGTGCTATTATGTTA

5′-AGCTAATGGTGAGATTTGAACTCATAA

60°C; 3 mM

Pfrps7

5′-TTTCCATGATCTACATGCCCTA

5′-TTCTTTAGATTCAACTGGGGTTTT

60°C; 4 mM