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Table 4 Number of alleles and genetic diversity by locus by site

From: Assessment of an automated capillary system for Plasmodium vivax microsatellite genotyping

Pop

Padrecocha

San Jose de Lupuna

Santo Tomas

Locus

N

Na

MAF (%)

He

N

Na

MAF (%)

He

N

Na

MAF (%)

He

MS1

70

5

2 (40)

0.659

55

6

4 (67)

0.52

63

6

4 (67)

0.467

MS2

77

7

4 (57)

0.651

56

8

3 (38)

0.812

64

8

3 (38)

0.8

MS3

84

2

0 (0)

0.413

53

6

2 (33)

0.761

72

4

2 (50)

0.476

MS4

86

9

4 (44)

0.826

55

6

3 (50)

0.71

77

9

4 (44)

0.822

MS5

87

4

2 (50)

0.539

56

2

0 (0)

0.341

78

2

0 (0)

0.399

MS6

74

7

2 (29)

0.811

53

6

1 (17)

0.816

77

6

2 (33)

0.766

MS7

77

5

3 (60)

0.536

56

4

3 (75)

0.17

66

3

2 (67)

0.296

MS8

74

11

4 (36)

0.873

49

12

6 (50)

0.854

76

13

7 (54)

0.841

MS9

72

11

3 (27)

0.894

53

9

2 (22)

0.864

73

12

5 (42)

0.866

MS10

85

12

8 (67)

0.734

49

11

5 (45)

0.838

58

13

8 (62)

0.817

MS12

81

11

7 (64)

0.779

52

13

4 (31)

0.912

76

10

4 (40)

0.838

MS15

84

8

3 (38)

0.81

55

7

3 (43)

0.789

75

7

3 (43)

0.739

MS16

70

18

9 (50)

0.902

48

15

7 (47)

0.895

62

15

6 (40)

0.901

MS20

82

8

2 (25)

0.844

55

12

3 (25)

0.905

68

13

4 (31)

0.9

Pv6635

84

12

4 (33)

0.891

54

9

4 (44)

0.82

73

9

4 (44)

0.814

  1. N number of samples that amplified per locus, Na number of alleles, MAF number of alleles at minor allele frequency (frequency less than 5 %), He unbiased expected heterozygosity