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Table 4 Number of alleles and genetic diversity by locus by site

From: Assessment of an automated capillary system for Plasmodium vivax microsatellite genotyping

Pop Padrecocha San Jose de Lupuna Santo Tomas
Locus N Na MAF (%) He N Na MAF (%) He N Na MAF (%) He
MS1 70 5 2 (40) 0.659 55 6 4 (67) 0.52 63 6 4 (67) 0.467
MS2 77 7 4 (57) 0.651 56 8 3 (38) 0.812 64 8 3 (38) 0.8
MS3 84 2 0 (0) 0.413 53 6 2 (33) 0.761 72 4 2 (50) 0.476
MS4 86 9 4 (44) 0.826 55 6 3 (50) 0.71 77 9 4 (44) 0.822
MS5 87 4 2 (50) 0.539 56 2 0 (0) 0.341 78 2 0 (0) 0.399
MS6 74 7 2 (29) 0.811 53 6 1 (17) 0.816 77 6 2 (33) 0.766
MS7 77 5 3 (60) 0.536 56 4 3 (75) 0.17 66 3 2 (67) 0.296
MS8 74 11 4 (36) 0.873 49 12 6 (50) 0.854 76 13 7 (54) 0.841
MS9 72 11 3 (27) 0.894 53 9 2 (22) 0.864 73 12 5 (42) 0.866
MS10 85 12 8 (67) 0.734 49 11 5 (45) 0.838 58 13 8 (62) 0.817
MS12 81 11 7 (64) 0.779 52 13 4 (31) 0.912 76 10 4 (40) 0.838
MS15 84 8 3 (38) 0.81 55 7 3 (43) 0.789 75 7 3 (43) 0.739
MS16 70 18 9 (50) 0.902 48 15 7 (47) 0.895 62 15 6 (40) 0.901
MS20 82 8 2 (25) 0.844 55 12 3 (25) 0.905 68 13 4 (31) 0.9
Pv6635 84 12 4 (33) 0.891 54 9 4 (44) 0.82 73 9 4 (44) 0.814
  1. N number of samples that amplified per locus, Na number of alleles, MAF number of alleles at minor allele frequency (frequency less than 5 %), He unbiased expected heterozygosity