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Table 1 Estimates of DNA sequence polymorphism and tests of neutrality at PvAMA-1 among Plasmodium vivax Korean isolates

From: Population genetic structure and natural selection of apical membrane antigen-1 in Plasmodium vivax Korean isolates

Fragment Segregating sites (S) Singleton variable sites Parsimony informative sites Total no. of mutations K H Hd ± SD π ± SD dN/dS Tajima’s D Fu and Li’s D Fu and Li’s F
5ʹ-Terminal 2 1 1 2 0.090 3 0.089 ± 0.048 0.00071 ± 0.00039 0 −1.3151 (P > 0.10) −1.2487 (P > 0.10) −0.9681 (P > 0.10)
Domain I 35 10 25 35 4.856 20 0.830 ± 0.043 0.00786 ± 0.00087 0.765 −1.1028 (P > 0.10) −0.9845 (P > 0.10) −0.6579 (P > 0.10)
Domain II 11 4 7 11 0.985 10 0.682 ± 0.038 0.00240 ± 0.00030 1.946 −1.5941 (0.05 < P <0.1) −1.4316 (P > 0.10) −1.0111 (P > 0.10)
Domain III 11 3 8 11 1.839 12 0.848 ± 0.023 0.00601 ± 0.00054 0.433 −0.5681 (P > 0.10) −0.5407 (P > 0.10) −0.3995 (P > 0.10)
3ʹ-Terminal 7 4 3 7 0.300 6 0.201 ± 0.066 0.00132 ± 0.00048 0.358 −1.9993 (P < 0.05) −2.3973 (P < 0.05) −2.0530 (P < 0.05)
Full 66 22 44 66 8.070 30 0.961 ± 0.012 0.00478 ± 0.00038 0.703 −1.4140 (P > 0.10) −1.5383 (P > 0.10) −1.2030 (P > 0.10)
  1. K average number of pairwise nucleotide differences, H number of haplotypes, Hd haplotype diversity, π observed average pairwise nucleotide diversity, dN rate of non-synonymous mutations, dS rate of synonymous mutations