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Table 1 pLDH protein sequence alignment analysis of different species of murine Plasmodium

From: Plasmodium berghei bio-burden correlates with parasite lactate dehydrogenase: application to murine Plasmodium diagnostics

pLDH sequence alignment using Clustal Omega

 

1

60

P. falciparum 3D7

MAPKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK

P. vinckei

M PQRP KIVLVGSGMIGGVMATLIVQKNLGDVV M FDIVK D MPHGKALDTSHTNVMAYSNCK

P. chabaudi chabaudi

MAPKAKIVLVGSGMIGGVMATLIVQKNLGDVV M FDIVK D MPHGKALDTSHTNVMAYSNC Q

P. yoelii 17XNL

MAPKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK

P. berghei ANKA

MAPKAKIVLVGSGMIGGVMATLIVQKNLGDVV M FDIVKNMPHGKALDTSHTNVMAYSNCK

 

61

120

P. falciparum 3D7

VSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNA

P. vinckei

V T GSN S YDDL K GADVVIVTAGFTK V PGKS E KEWNRDDLLPLNNKIMIEIGGHIKK Q CPNA

P. chabaudi chabaudi

VSGSNTYDDL K GADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKK H CP H A

P. yoelii 17XNL

VSGSNTYDDL KD ADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIK N NCPNA

P. berghei ANKA

VSGSNTYDDL KD ADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIK N NCPNA

 

121

180

P. falciparum 3D7

FIIVVTNPVDVMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVG

P. vinckei

FIIVVTNPVDVMVQLLHQHSGVPKNKI V GLGGVLD S SR F KYYI AE KLNVCPRDVNAHIVG

P. chabaudi chabaudi

FIIVVTNPVDVMVQLLHQHSGVPKNKI V GLGGVLDTSRLKYYISQKLNVCPRDVNAHIVG

P. yoelii 17XNL

FIIVVTNPVDVMVQLLHQHSGVPKNKI V GLGGVLDTSRLKYYISQKLNVCPRDVNAHIVG

P. berghei ANKA

FIIVVTNPVDVMVQLLHQHSGVPKNKI V GLGGVLDTSRLKYYISQKLNVCPRDVNAHIVG

 

181

240

P. falciparum 3D7

AHGNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNLHASPYVAPA

P. vinckei

AHGNKMVLLKRYITVGGIPLQEFINN NK I TED EL K A MA DRT I NTALEIVNLHASPYVAPA

P. chabaudi chabaudi

AHGNKMVLLKRYITVGGIP I QEFINNK K ISD QD LEAIFDRT I NTALEIVNLHASPYVAPA

P. yoelii 17XNL

AHGNKMVLLKRYITVGGIPLQEFINNK K I T D Q EL D AIFDRTVNTALEIVNLHASPYVAPA

P. berghei ANKA

AHGNKMVLLKRYITVGGIPLQEFINNK K I T D Q EL D AIFDRT I NTALEIVNLHASPYVAPA

 

241

300

P. falciparum 3D7

AAIIEMAESYLKDLKKVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVIELQLNSEEKA

P. vinckei

AAIIEMAESYLKDL R KVLICSTLLEG E YGH K DIF A GTP L V I G G NGVEQVIELQLN ET EK M

P. chabaudi chabaudi

AAIIEMAESY IR DL R KVLICSTLLEGQYGH K DIF A GTP L V I G G NGVEQVIELQLN AD EK K

P. yoelii 17XNL

AAIIEMAESY IR DL R KVLICSTLLEGQYGH K DIF A GTP L V I G G NGVEQVIELQLN AD EK K

P. berghei ANKA

AAIIEMAESY IR DL R KVLICSTLLEGQYGH K DIF A GTP L V I G G NGVEQVIELQLN AD EK K

 

301

316

P. falciparum 3D7

KFDEAIAETKRMKALA

 

P. vinckei

H FD N A V AET A RMKAL I

 

P. chabaudi chabaudi

KFDEA V AET S RMKAL V

 

P. yoelii 17XNL

KFDEA V AET S RMKAL I

 

P. berghei ANKA

KFDEA V AET S RMKAL I

 
  1. P. falciparum 3D7 (Pf LDH) [Accession ID XM_001349953.1] is the reference sequence. The bold letters indicate the dissimilarities in the amino acid sequences as compared to the pLDH amino acid sequence of P. falciparum. Plasmodium vinckei LDH [Accession ID XM_008624100.1]; P. chabaudi chabaudi LDH [Accession ID XM_740087.1]; P. yoelii 17XNL [Accession ID XM_719008.1]; P. berghei ANKA LDH [Accession ID XM_674309.1]