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Table 3 Key outputs and features of the different analysis tools

From: Analysis of ex vivo drug response data of Plasmodium clinical isolates: the pros and cons of different computer programs and online platforms

 

Method

 

NONMEM

WinNonlin

GraphPad Prism 6.0

HN-Nonlin

ICEstimator 1.2

IVART

Ease of use

 Free

   

✔

✔

✔

 96-well formata

   

✔

 

✔

 Batch analysis of multiple drugs

 

✔

✔

✔

 

✔

 Batch analysis of multiple isolates

✔e

✔

✔

  

✔

 Offline processing

 

✔

✔

✔

  

Key output

 IC50 estimate

✔

✔

✔

✔

✔

✔

 Slope estimate

✔

✔

✔

 

✔

✔

 Confidence interval of estimates

✔

✔

✔

 

✔

✔

 Success criteria and warning signs

 

✔

✔

 

✔

✔

 Dose–response curve

 

✔

✔

✔

✔

✔

Data processing and analysis

 Data conversion

 

Critical

Critical

Easy

Critical

Easy

 Approximate time needed for data conversion (seconds)b, c

 

45

25

25

25

25

 Data upload/entry

 

Critical

Critical

Easy

Critical

Easy

 Approximate time needed for data upload and processing (seconds)b, d

 

120

15

20

300

90

 Approximate total time needed to obtain estimates (seconds)

 

165

40

45

325

115

  1. aBased on the capability to enter the data in 96-well format
  2. bBased on the capability to run one isolate with five different drugs in duplicates distributed on two different 96-well plates
  3. cTime measurement includes the time needed to transfer raw data into a ‘converter’ spreadsheet and double checking the converted data to ensure that raw data was correctly entered and converted
  4. dTime measurement includes the time needed to transfer the converted raw data into the corresponding programs until the outputs were successfully transferred into a separate analysis spreadsheet
  5. eFor NONMEM, data from all isolates are modelled simultaneously