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Table 1 Metrics of data sets containing variant and invariant sites

From: Genomic signatures of population decline in the malaria mosquito Anopheles gambiae

Species No. indivs. No. of tag locations No. bp Mean coverage Mean dist between RADseq tags (kb) No. of SNPsa Mean (Max) SNPs per tag
An. gambiae 24 2033 172,655 88 131 6387 (6437) 3.14 (17)
An. arabiensis 36 2049 129,315 106 130 5137 (5195) 2.51 (23)
An. merus 12 2280 253,043 134 115 4135 (4161) 1.81 (13)
  1. aNumber in brackets shows number of SNPs in variant only data sets. Bayesian variant calling resulted in slightly different numbers of SNPs in variant only vs genotype data sets