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Table 1 Genome sequencing and genetic variation

From: Genomic variation in two gametocyte non-producing Plasmodium falciparum clonal lines

Clone Number of read pairs (Millions)b Median coveragec % genome with at least 5× coverage Genetic variationd
SNPs Indels Structural variants
3D7A 24.6 124 99.9 98 143 66
F12a 24.1 118 99.9 103 157 51
A4a 18 132 99.9 104 168 44
  1. aGametocyte non-producers
  2. bFrom Illumina GA II 76 bp paired-end
  3. cMapped to 3D7 version 3.0 and excluding multi-copy apicoplast and mitochondria
  4. dTotal variation per sample, including shared genetic variation but only polymorphisms located in non-sub-telomeric and unique regions