Genomic variation in two gametocyte non-producing Plasmodium falciparum clonal lines

Malaria Journal

Table 1 Genome sequencing and genetic variation

Clone	Number of read pairs (Millions)^b	Median coverage^c	% genome with at least 5× coverage	Genetic variation^d
Clone	Number of read pairs (Millions)^b	Median coverage^c	% genome with at least 5× coverage	SNPs	Indels	Structural variants
3D7A	24.6	124	99.9	98	143	66
F12^a	24.1	118	99.9	103	157	51
A4^a	18	132	99.9	104	168	44

^aGametocyte non-producers
^bFrom Illumina GA II 76 bp paired-end
^cMapped to 3D7 version 3.0 and excluding multi-copy apicoplast and mitochondria
^dTotal variation per sample, including shared genetic variation but only polymorphisms located in non-sub-telomeric and unique regions

ISSN: 1475-2875