Skip to main content

Table 2 Parameter values for simulated data sets

From: Approaches to estimating inbreeding coefficients in clinical isolates of Plasmodium falciparum from genomic sequence data

Parameter Description Simulation values
M Number of SNPs 10, 50, 150, 500, 1500
C Total read counts per SNP 10, 100, 1000, 10000
f Inbreeding coefficient 0.01, 0.1, 0.5, 0.9, 0.99
\(\beta\) Controls skew in allele frequency 1, 10, 100, 1000
  1. For each parameter set, 100 replicate data sets were generated