|
Single nucleotide polymorphism
|
Sequence length polymorphism
|
|---|
|
n
|
Sites
|
Ss
|
S
|
Ps
|
H
|
Hd
|
θw
|
π
|
Sites
|
No InDels
|
H
|
Hd
|
π
|
|---|
|
Colombian and reference isolates
|
|
80
|
2542
|
8
|
3
|
5
|
11
|
0.67
|
7.6 × 10−4
|
4.3 × 10−4
|
408
|
21
|
21
|
0.82
|
9.9 × 10−4
|
|
Colombian isolates
|
|
73
|
2464
|
5
|
0
|
5
|
8
|
0.65
|
4.7 × 10−4
|
4.1 × 10−4
|
289
|
15
|
15
|
0.78
|
8.0 × 10−4
|
- Genetic diversity estimators were calculated using the reference sequences obtained from databases together with Colombian isolates as well as for just Colombian isolates’ sequences
-
n number of isolates analysed, sites total of sites analysed excluding gaps, Ss number of segregating sites, S number of singleton sites, Ps number of informative-parsimonious sites, H number of haplotypes, Hd haplotype diversity, θ
w
Watterson estimator, π nucleotide diversity per site
