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Table 1 Oligonucleotides and DNA duplex substrates used in the study

From: Characterization of Plasmodium falciparum ATP-dependent DNA helicase RuvB3

Oligonucleotide type

Sequence: 5′-3′

1. 17mer

5′-GTAAAACGACGGCCAGT-3′

2. 32mer-I

5′-TTTTTTTTTTTTTTTGTTTTCCCAGTCACGAC-3′

3. 32mer-II

5′-GTTTTCCCAGTCACGACTTTTTTTTTTTTTTT-3′

4. 34mer

5′-ATAAAAATTTTTAGAACCCTCATATATTTTAAAT-3′

5. 41mer-I

5′-AATTCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTG-3′

6. 41mer-II

5′-CAGGTCGACTCTAGAGGATCCCCGGGTACCGAGCTCGAATT-3′

7. 47mer

5′-TTTTTTTTTTTTTTTGTTTTCCCAGTCACGACTTTTTTTTTTTTTTT-3′

DNA duplex

Component

Short oligonucleotide

M13mp18 + 17mer

Long oligonucleotide

M13mp18 + 34 mer

Blunted end

41 mer-I + 41 mer-II

3′overhang

M13mp18 + 32 mer-II

5′overhang

M13mp18 + 32 mer-I

3′and 5′ overhang

M13mp18 + 47 mer