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Table 2 SNP concordance analysis of dried blood spots (DBS; sWGA) and venous blood (VB; leucodepleted and unamplified) samples (N = 113)

From: Whole genome sequencing of Plasmodium falciparum from dried blood spots using selective whole genome amplification

  Ref/Ref Alt/Alt Ref/Alt Alt/Ref
Average 1,130,936.8 (99.82%) 1,391.3 (0.12%) 288.4 (0.02%) 283.4 (0.02%)
SD 124,553.8 (10.9%) 848.6 (0.07%) 477.8 (0.04%) 498.3 (0.04%)
Median 1,179,088 (99.9%) 1,026 (0.08%) 0 0
  1. Genotype calls across ~1.2 million biallelic typable SNPs from matching VB and DBS (sWGA) sample pairs were analysed to obtain SNP concordance between the two sample processing methods. Ref, reference genotype call; Alt, alternative genotype call; Het, heterogeneous calls; Miss, missing calls