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Table 2 SNP concordance analysis of dried blood spots (DBS; sWGA) and venous blood (VB; leucodepleted and unamplified) samples (N = 113)

From: Whole genome sequencing of Plasmodium falciparum from dried blood spots using selective whole genome amplification

 

Ref/Ref

Alt/Alt

Ref/Alt

Alt/Ref

Average

1,130,936.8 (99.82%)

1,391.3 (0.12%)

288.4 (0.02%)

283.4 (0.02%)

SD

124,553.8 (10.9%)

848.6 (0.07%)

477.8 (0.04%)

498.3 (0.04%)

Median

1,179,088 (99.9%)

1,026 (0.08%)

0

0

  1. Genotype calls across ~1.2 million biallelic typable SNPs from matching VB and DBS (sWGA) sample pairs were analysed to obtain SNP concordance between the two sample processing methods. Ref, reference genotype call; Alt, alternative genotype call; Het, heterogeneous calls; Miss, missing calls
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Malaria Journal

ISSN: 1475-2875

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