Plasmobase: a comparative database of predicted domain architectures for Plasmodium genomes

Malaria Journal

Table 2 New domains identified in Plasmobase, possibly by co-occurrence (Cooc)

	First time^a		Enriching domains^b		New domains^c		Brand-new domains^d
	Cooc^e	Total^f	Cooc^e	Total^f	Cooc^e	Total^f	Cooc^e	Total^f
P. falciparum 3D7	467	916	1052	1200	1519	2116	603	971
P. falciparum IT	368	691	893	984	1261	1675	496	741
P. vivax	324	659	871	996	1195	1655	525	824
P. knowlesi H	289	578	858	955	1147	1533	504	736
P. cynomolgi	296	614	703	792	999	1406	392	632
P. reichenowi CDC	373	679	911	1004	1284	1683	513	737
P. chabaudi	328	730	785	874	1113	1604	468	678
P. berghei	316	666	768	841	1084	1507	431	635
P. yoelii 17X	310	754	776	847	1086	1601	427	646
P. yoelii yoelii 17XNL	253	714	660	724	913	1438	370	556
P. yoelii YM	310	702	779	851	1089	1553	426	642

^aNumber of domain predictions occurring on proteins with no annotation in PlasmoDB
^bNumber of new domains enriching known protein architectures
^cTotal number of new domains, corresponding to the sum of a and b
^dNumber of new domains that occur in no proteins for the current Plasmodium species, according to PlasmoDB
^eNumber of predicted domains that are supported by co-occurrence
^fTotal number of identified domains, predicted or not based on co-occurrence

ISSN: 1475-2875