Marker locus | RP | Sequence primer flanking | AS (bp) | Ta (°C) | An. coluzzii (N = 119) | An. gambiae (N = 82) | An. arabiensis (N = 309) | |||
---|---|---|---|---|---|---|---|---|---|---|
Na | A | Na | A | Na | A | |||||
H59 | (GT)9 | 5′ CCCCTATTAAACCCTGGACG 3′ 3′ TGTTGTTGCCCTGCGTTACC 5′ | 123 | 55 | 10 | 6.75 ± 1.71 | 7 | 6.00 ± 1.00 | 13 | 7.33 ± 1.50 |
H88 | (GT)9 | 5′TGCGGCGGTAAAGCATCAAC 3′ 3′ CCGGTAACACTGCGCCGAC 5′ | 176 | 60 | NPA | NPA | NPA | NPA | 23 | 13.44 ± 3.05 |
H93 | (GT)4 + 7 | 5′ TCCCCAGCTCACCCTTCAAG 3′ 3′ GGTTGCATGTTTGGATAGCG 5′ | 209 | 55 | 19 | 10.75 ± 3.86 | 20 | 12.67 ± 0.58 | 30 | 13.00 ± 3.81 |
H119 | (GT)6 | 5′ GGTTGATGCTGAAGAGTGGG 3′ 3′ ATGCCAGCGGATACGATTCG 5′ | 174 | 55 | 17 | 12.25 ± 1.26 | 14 | 10.67 ± 0.58 | 10 | 6.89 ± 1.69 |
H128 | (GT)21 | 5′ CGGGACGGCTAGATAAAGCG 3′ 3′ CCGGGCGACATAACCCACCC 5′ | 117 | 55 | 25 | 17.5 ± 3.42 | 24 | 16.67 ± 3.22 | b | b |
H242 | (GT)8 | 5′TTCATTTCCACCGCAGCTGC 3′ 3′GGCGACACTCAATCCTTCC 5′ | 69 | 58 | 7 | 5.50 ± 1.00 | 7 | 5.67 ± 0.58 | c | c |
H249 | (GT)15 | 5′ ATGTTCCGCACTTCCGACAC 3′ 3′ GCGAGCTACAACAATGGAGC 5′ | 129 | 60 | 22 | 13.50 ± 1.73 | 17 | 12.33 ± 1.16 | 27 | 12.67 ± 2.69 |
H312 | (GT)10 | 5′ TAAACCATCAACCAGCCACC 3′ 3′ ACTGTGTGCGAGTCGGTTGG 5′ | 108 | 58 | 19 | 12.75 ± 1.50 | 16 | 13.00 ± 0.00 | 29 | 15.33 ± 4.79 |
H555 | (GT)8 | 5′GCAGAGACACTTTCCGAAAC3′ 3′ TGTCAACCCACATTTTGCGC 5′ | 81 | 55 | 17 | 10.50 ± 3.00 | 15 | 9.67 ± 3.06 | b | b |
H577 | (GT)16 | 5′ TTCAGCTTCAGGTTGGTCTC 3′ 3′ GGGTTTTTTGGCTGCGACTG 5′ | 113 | 55 | 13 | 8.50 ± 2.65 | 14 | 10.00 ± 1.00 | 22 | 10.78 ± 3.31 |
H746 | (GT)14 | 5′ TGGGTTCGAAATTCGCCAAC 3′ 3′ GACGTGTGCACCCGTTGTG 5′ | 105 | 58 | 14 | 11.25 ± 1.26 | 13 | 10.67 ± 1.16 | 29 | 16.89 ± 2.57 |
H758 | (GT)11 | 5′ TGATTTGCCAGTTCTGCCAG 3′ 3′ GTGATTGGAGTGGCTAGTGG 5′ | 105 | 60 | a | a | a | a | 11 | 5.11 ± 0.93 |
H812 | (GT)10 | 5′CTGGCCCATTTTGCATATGC 3′ 3′ TGCTCCACCAAACCACATC 5′ | 131 | 55 | a | a | a | a | 15 | 10.00 ± 1.58 |
H817 | (GT)8 | 5′ ACTGGTCCGTTGCTGCGCG 3′ 3′ ATGAGTGAATGGTGCGCTGG 5′ | 124 | 58 | 7 | 6.00 ± 0.82 | 6 | 5.00 ± 1.00 | b | b |
Mean |  |  |  |  | 15.46 ± 5.87 | 10.48 ± 3.89 | 13.91 ± 5.59 | 10.21 ± 3.76 | 20.90 ± 7.56 | 11.14 ± 4.14 |