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Table 3 Summary population genetic data based on sample type and province

From: A deep sequencing approach to estimate Plasmodium falciparum complexity of infection (COI) and explore apical membrane antigen 1 diversity

 

Number of samples

Number of haplotypes

# Polymorphic sites (S)

Nucleotide Diversity (π)

Haplotype diversity (Hd)

All

Ind.a

Popb (#Ind./pop)c

All

Ind.

Pop.

All

Ind.

Pop.

All

Ind.

Pop.

All

Ind.

Pop.

Bandundu

23

11

12 (177)

35

20

29

20

19

18

0.0404

0.0401

0.0402

0.925

0.884

0.922

Bas-Congo

8

4

4 (30)

15

7

10

18

17

17

0.0278

0.0306

0.0197

0.569

0.769

0.451

Equateur

19

11

8 (112)

35

21

23

22

21

19

0.0434

0.0434

0.0429

0.921

0.913

0.908

Kasai-Occidental

13

9

4 (38)

25

14

16

20

18

17

0.0405

0.0396

0.0400

0.909

0.876

0.886

Kasai-Oriental

16

8

8 (107)

30

19

20

20

20

18

0.0457

0.0437

0.0455

0.8740

0.842

0.866

Katanga

10

4

6 (69)

22

6

19

20

13

19

0.0396

0.0344

0.0392

0.906

0.724

0.899

Kinshasa

13

7

6 (39)

28

13

23

21

18

18

0.0419

0.0388

0.0411

0.888

0.836

0.86

Maniema

10

4

6 (54)

21

6

16

21

14

18

0.0341

0.0319

0.0335

0.879

0.758

0.863

Nord-Kivu

5

2

3 (15)

12

5

10

18

14

17

0.0386

0.0389

0.0364

0.750

0.714

0.701

Orientale

26

14

12 (147)

40

27

27

21

21

19

0.0440

0.0403

0.0442

0.9202

0.909

0.91

Sud-Kivu

9

5

4 (33)

19

6

16

19

15

18

0.0315

0.0348

0.0291

0.834

0.731

0.791

  1. aIndividual samples
  2. bNumber of population cluster samples in the province
  3. cNumber of individual samples that make up the pooled population cluster samples