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Table 3 Summary population genetic data based on sample type and province

From: A deep sequencing approach to estimate Plasmodium falciparum complexity of infection (COI) and explore apical membrane antigen 1 diversity

  Number of samples Number of haplotypes # Polymorphic sites (S) Nucleotide Diversity (π) Haplotype diversity (Hd)
All Ind.a Popb (#Ind./pop)c All Ind. Pop. All Ind. Pop. All Ind. Pop. All Ind. Pop.
Bandundu 23 11 12 (177) 35 20 29 20 19 18 0.0404 0.0401 0.0402 0.925 0.884 0.922
Bas-Congo 8 4 4 (30) 15 7 10 18 17 17 0.0278 0.0306 0.0197 0.569 0.769 0.451
Equateur 19 11 8 (112) 35 21 23 22 21 19 0.0434 0.0434 0.0429 0.921 0.913 0.908
Kasai-Occidental 13 9 4 (38) 25 14 16 20 18 17 0.0405 0.0396 0.0400 0.909 0.876 0.886
Kasai-Oriental 16 8 8 (107) 30 19 20 20 20 18 0.0457 0.0437 0.0455 0.8740 0.842 0.866
Katanga 10 4 6 (69) 22 6 19 20 13 19 0.0396 0.0344 0.0392 0.906 0.724 0.899
Kinshasa 13 7 6 (39) 28 13 23 21 18 18 0.0419 0.0388 0.0411 0.888 0.836 0.86
Maniema 10 4 6 (54) 21 6 16 21 14 18 0.0341 0.0319 0.0335 0.879 0.758 0.863
Nord-Kivu 5 2 3 (15) 12 5 10 18 14 17 0.0386 0.0389 0.0364 0.750 0.714 0.701
Orientale 26 14 12 (147) 40 27 27 21 21 19 0.0440 0.0403 0.0442 0.9202 0.909 0.91
Sud-Kivu 9 5 4 (33) 19 6 16 19 15 18 0.0315 0.0348 0.0291 0.834 0.731 0.791
  1. aIndividual samples
  2. bNumber of population cluster samples in the province
  3. cNumber of individual samples that make up the pooled population cluster samples