A deep sequencing approach to estimate Plasmodium falciparum complexity of infection (COI) and explore apical membrane antigen 1 diversity

Table 3 Summary population genetic data based on sample type and province

	Number of samples			Number of haplotypes			# Polymorphic sites (S)			Nucleotide Diversity (π)			Haplotype diversity (Hd)
	All	Ind.^a	Pop^b (#Ind./pop)^c	All	Ind.	Pop.	All	Ind.	Pop.	All	Ind.	Pop.	All	Ind.	Pop.
Bandundu	23	11	12 (177)	35	20	29	20	19	18	0.0404	0.0401	0.0402	0.925	0.884	0.922
Bas-Congo	8	4	4 (30)	15	7	10	18	17	17	0.0278	0.0306	0.0197	0.569	0.769	0.451
Equateur	19	11	8 (112)	35	21	23	22	21	19	0.0434	0.0434	0.0429	0.921	0.913	0.908
Kasai-Occidental	13	9	4 (38)	25	14	16	20	18	17	0.0405	0.0396	0.0400	0.909	0.876	0.886
Kasai-Oriental	16	8	8 (107)	30	19	20	20	20	18	0.0457	0.0437	0.0455	0.8740	0.842	0.866
Katanga	10	4	6 (69)	22	6	19	20	13	19	0.0396	0.0344	0.0392	0.906	0.724	0.899
Kinshasa	13	7	6 (39)	28	13	23	21	18	18	0.0419	0.0388	0.0411	0.888	0.836	0.86
Maniema	10	4	6 (54)	21	6	16	21	14	18	0.0341	0.0319	0.0335	0.879	0.758	0.863
Nord-Kivu	5	2	3 (15)	12	5	10	18	14	17	0.0386	0.0389	0.0364	0.750	0.714	0.701
Orientale	26	14	12 (147)	40	27	27	21	21	19	0.0440	0.0403	0.0442	0.9202	0.909	0.91
Sud-Kivu	9	5	4 (33)	19	6	16	19	15	18	0.0315	0.0348	0.0291	0.834	0.731	0.791

^aIndividual samples
^bNumber of population cluster samples in the province
^cNumber of individual samples that make up the pooled population cluster samples

ISSN: 1475-2875