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Table 1 Estimates of nucleotide diversity, haplotype diversity and neutrality indices of pktrap

From: Diversity and natural selection on the thrombospondin-related adhesive protein (TRAP) gene of Plasmodium knowlesi in Malaysia

Domain

No. samples

SNPs

Syn

Non Syn

No. haplotype

Diversity ± SD

Taj D

dN–dS ± S.E

Fu and Li’s D*

Fu and Li’s F*

Haplotype

Nucleotide

Full-length

40

74

21

53

29

0.978 ± 0.007

0.00908 ± 0.0007

− 0.38

− 0.003 ± 0.001

0.30

0.07

von Willebrand factor domain

20

4

16

14

0.910 ± 0.023

0.00922 ± 0.0001

0.07

− 0.001 ± 0.001

1.31

1.06

TSP domain

6

1

5

7

0.670 ± 0.054

0.0070 ± 0.00095

− 0.97

− 0.016 ± 0.02

− 0.46

− 0.72

Proline/asparagine-rich region

39

13

26

22

0.959 ± 0.015

0.01254 ± 0.0011

− 0.29

− 0.005 ± 0.001

0.46

0.24

  1. SNPs single nucleotide polymorphisms, SD standard deviation, Syn synonymous substitutions, NonSyn non synonymous substitutions, S.E standard error