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Fig. 2 | Malaria Journal

Fig. 2

From: Reduced-representation sequencing identifies small effective population sizes of Anopheles gambiae in the north-western Lake Victoria basin, Uganda

Fig. 2

Principal component analysis (PCA) plots of the Anopheles gambiae genome-wide SNP dataset (N = 79). In ac each dot represents an individual mosquito that was sequenced by RADseq technology. Entomological sampling sites are color-coded according to the legend as follows: BK (Bukasa); BL (Bugala); EB (Entebbe); NZ (Nsadzi); SY (Sserinya), and WL (Wamala). The first principal component (PC1) and its percentage variance are represented by the y-axis and, likewise, the x-axis represents the second principal component (PC2) and its percentage variance. a Plot of 5175 SNPs mapped to the AgamP4 genome [42]. b Plot of 1078 SNPs mapped to chromosome 2L [42]. c Plot of 4097 SNPs mapped to the AgamP4 genome [42] after removal of chromosome 2L SNPs

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