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Table 1 Estimates of nucleotide diversity, natural selection, haplotype diversity and neutrality indices of pkmsp1

From: Within-population genetic diversity and population structure of Plasmodium knowlesi merozoite surface protein 1 gene from geographically distinct regions of Malaysia and Thailand

Domain No. samples SNPs No. haplotype Diversity ± SD dN–dS Codon based z test Taj D Fu and Li’s D* Fu and Li’s F*
Haplotype Nucleotide
Full-length 11 384 10 1.0 ± 0.04 0.039 ± 0.003 0.38 P > 0.1 0.161 0.54 0.50
I 32 9 0.978 ± 0.05 0.019 ± 0.002 − 1.14 P > 0.1 0.50 0.70 0.74
III 53 10 1.0 ± 0.04 0.0151 ± 0.001 − 3.88 P < 0.000 0.21 0.27 0.29
V 12 7 0.911 ± 0.07 0.010 ± 0.001 − 2.44 P < 0.01 − 0.68 − 0.72 − 0.80
VII 53 9 0.978 ± 0.05 0.019 ± 0.002 − 3.55 P < 0.000 − 0.23 − 0.36 − 0.37
IX (42 kDa) 27 10 1.0 ± 0.04 0.007 ± 0.0007 − 4.34 P < 0.000 − 0.01 − 0.05 − 0.04
  1. SNPs single nucleotide polymorphisms, SD standard deviation