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Table 2 Location wise nucleotide diversity, natural selection, haplotype diversity and neutrality indices of pkmsp1-42

From: Within-population genetic diversity and population structure of Plasmodium knowlesi merozoite surface protein 1 gene from geographically distinct regions of Malaysia and Thailand

Location No. of samples SNPs No. haplotype Diversity ± SD dN–dS Codon based z test Taj D Fu and Li’s D* Fu and Li’s F*
Haplotype Nucleotide
Malaysian Borneo (Sarawak) 37 39 32 0.989 ± 0.010 0.006 ± 0.0006 − 4.27 P < 0.000 − 1.07 − 1.22 − 1.33
Malaysian Borneo (Sabah) 5 20 5 1.0 ± 0.126 0.009 ± 0.002 − 3.75 P < 0.000 − 0.61 − 0.61 − 0.66
Peninsular Malaysia 11 28 9 0.978 ± 0.054 0.010 ± 0.001 − 3.10 P < 0.002 − 0.27 − 0.08 − 0.14
Thailand 23 38 14 0.937 ± 0.033 0.010 ± 0.001 − 3.21 P < 0.001 − 0.08 − 0.35 − 0.31
Overall 76 72 58 0.990 ± 0.005 0.009 ± 0.0005 − 4.48 P < 0.000 − 1.29 − 2.54** − 2.45**
  1. ** P < 0.05