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Table 2 Summary statistics of RNA preparation, RNA sequencing, read mapping to the human GRCh37 and P. vivax P01 genomes, and sequence coverage, for 10 clinical isolates from vivax malaria patients taken from two regions: Ubon Ratchathani (UBT; North-East) and Yala (YL; South)
| Isolate | Total RNA (ng) | RNA integrity number (RIN) | Total read pairsa | Pair reads mapped to human | Percentage of reads mapped to human | Pair reads mapped to P. vivax | Percentage of reads mapped to P. vivax | Mean sequence coverage | |
|---|---|---|---|---|---|---|---|---|---|
| 1 | UBT3086 | 585.2 | 2 | 29,157,609 | 22,771,884 | 78.10 | 346,899 | 1.20 | 1.82 |
| 2 | UBT3087 | 392 | 2.4 | 36,549,438 | 29,392,764 | 80.42 | 977,753 | 2.68 | 17.67 |
| 3 | UBT3089 | 1498 | 2.3 | 30,083,802 | 23,272,992 | 77.36 | 3,035,144 | 10.09 | 78.52 |
| 4 | UBT3090 | 719.6 | 2.3 | 30,397,809 | 22,226,523 | 73.12 | 3,267,128 | 10.75 | 17.59 |
| 5 | UBT3091 | 504 | 2.3 | 28,550,673 | 18,312,289 | 64.14 | 6,388,456 | 22.38 | 42.07 |
| 6 | YL3111 | 627.2 | 2.3 | 29,500,938 | 26,039,174 | 88.27 | 580,181 | 1.97 | 3.18 |
| 7 | YL3112 | 1005.2 | 2.3 | 32,578,915 | 27,732,216 | 85.12 | 913,421 | 2.80 | 4.95 |
| 8 | YL3113 | 280 | 2 | 26,853,921 | 21,654,627 | 80.64 | 209,249 | 0.78 | 1.07 |
| 9 | YL3114 | 1470 | 2.8 | 31,860,822 | 27,764,327 | 87.14 | 350,337 | 1.10 | 1.88 |
| 10 | YL3115 | 641.2 | 2.5 | 32,987,343 | 24,102,143 | 73.05 | 3,469,628 | 10.52 | 20.13 |
