From: Detection of low-density Plasmodium falciparum infections using amplicon deep sequencing
 | DADA2 | HaplotypR | PASEC | SeekDeep1x | SeekDeep2x |
---|---|---|---|---|---|
All samples | |||||
 Sensitivity | |||||
  All | 0.66 [0.62, 0.70] | 0.66 [0.62, 0.70] | 0.71 [0.68, 0.75] | 0.72 [0.68, 0.76] | 0.62 [0.56, 0.68] |
  CSP | 0.66 [0.61, 0.71] | 0.64 [0.59, 0.70] | 0.70 [0.64, 0.75] | 0.70 [0.65, 0.75] | 0.61 [0.53, 0.69] |
  SERA2 | 0.65 [0.59, 0.70] | 0.68 [0.62, 0.74] | 0.73 [0.68, 0.78] | 0.73 [0.68, 0.79] | 0.63 [0.55, 0.71] |
 Precision | |||||
  All | 0.81 [0.77, 0.84] | 0.88 [0.85, 0.90] | 0.81 [0.78, 0.85] | 0.25 [0.23, 0.27] | 0.68 [0.63, 0.74] |
  CSP | 0.72 [0.67, 0.77] | 0.94 [0.91, 0.97] | 0.86 [0.81, 0.89] | 0.26 [0.23, 0.28] | 0.77 [0.69, 0.84] |
  SERA2 | 0.91 [0.87, 0.94] | 0.82 [0.78, 0.86] | 0.77 [0.72, 0.82] | 0.25 [0.22, 0.28] | 0.61 [0.53, 0.68] |
Samples with ≥ 100 reads | |||||
 Sensitivity | |||||
  All | 0.83 [0.80, 0.86] | 0.84 [0.81, 0.86] | 0.83 [0.81, 0.86] | 0.83 [0.80, 0.86] | 0.78 [0.78, 0.87] |
  CSP | 0.82 [0.78, 0.86] | 0.82 [0.77, 0.86] | 0.82 [0.78, 0.86] | 0.82 [0.78, 0.86] | 0.84 [0.78, 0.89] |
  SERA2 | 0.85 [0.80, 0.89] | 0.86 [0.81, 0.90] | 0.85 [0.80, 0.89] | 0.85 [0.81, 0.89] | 0.82 [0.75, 0.88] |
Precision | |||||
  All | 0.83 [0.80, 0.86] | 0.89 [0.87, 0.92] | 0.92 [0.90, 0.94] | 0.26 [0.24, 0.28] | 0.79 [0.74, 0.84] |
  CSP | 0.75 [0.70, 0.79] | 0.94 [0.91, 0.96] | 0.95 [0.92, 0.97] | 0.27 [0.24, 0.30] | 0.88 [0.83, 0.93] |
  SERA2 | 0.92 [0.88, 0.95] | 0.84 [0.80, 0.88] | 0.90 [0.86, 0.93] | 0.25 [0.22, 0.28] | 0.71 [0.63, 0.78] |