Table 2 Polymorphisms in the pvdbp-II fragment of isolates from AF and BA regions
Codonsa | Sal-1b | Polymorphic sitesc | Isolates | ||
|---|---|---|---|---|---|
AF (79) N (%) | BA (137) N (%) | Total (216) N (%) | |||
N305Y | AAT | TAT | 57 (72) | 13 (9) | 70 (32) |
R308S | AGG | AGT | 57 (72) | 26 (19) | 83 (38) |
I322S | ATT | AGT | 17 (22) | 0 | 0 |
L333F | CTT | TTT | 52 (66) | 7 (5) | 59 (27) |
K371E | AAA | GAA | 17 (22) | 55 (40) | 72 (33) |
K371N | AAA | AAT | 10 (13) | 0 | 0 |
N375D | AAT | GAT | 0 | 6 (4) | 0 |
R378R | CGC | CGT | 55 (70) | 12 (9) | 67 (31) |
D384G | GAT | GGT | 78 (99) | 113 (82) | 191 (88) |
E385K | GAA | AAA | 36 (46) | 30 (22) | 66 (30) |
E385Q | GAA | CAA | 21 (27) | 0 | 0 |
E385T | GAA | ACA | 3 (4) | 0 | 0 |
K386Q | AAG | CAG | 17 (22) | 30 (22) | 47 (22) |
K386N | AAG | AAT | 37 (47) | 29 (21) | 66 (30) |
K386T | AAG | ACT | 22 (28) | 0 | 0 |
R390H | CGT | CAT | 59 (75) | 54 (39) | 113 (52) |
S398T | TCT | ACT | 1 (1) | 6 (4) | 7 (3) |
T404R | ACA | AGA | 59 (75) | 7 (5) | 66 (30) |
K411N | AAA | AAC | 60 (76) | 0 | 0 |
N417K | AAT | AAA | 16 (20) | 64 (47) | 80 (37) |
I419L | ATA | CTA | 20 (25) | 0 | 0 |
I419R | ATA | AGA | 6 (8) | 0 | 0 |
I419M | ATA | ATG | 0 | 13 (9) | 0 |
L424I | TTA | ATA | 77 (97) | 75 (55) | 152 (70) |
W437R | TGG | CGG | 17 (22) | 70 (51) | 87 (40) |
Q454P | CAA | CCA | 8 (10) | 12 (9) | 20 (9) |
Q486E | CAA | GAA | 2 (2) | 5 (4) | 7 (3) |
I503K | ATA | AAA | 14 (18) | 62 (45) | 76 (35) |