Skip to main content

Table 1 Sequencing statistics in samples that underwent direct sequencing versus sWGA

From: Optimization of parasite DNA enrichment approaches to generate whole genome sequencing data for Plasmodium falciparum from low parasitaemia samples

 

Direct Sequencing (n = 3)

sWGA (n = 3)

Total reads sequenced

30,878,334

33,586,527

Reads mapped to P. falciparum (%)

92.21

95.52

Genome with 5X coverage (%)

98.68

95.53

Mean coverage depth

196X

213X

Total SNPs

32,775

22,355

FWS

0.068 ± 0.009

0.116 ± 0.015

Back to article page

Malaria Journal

ISSN: 1475-2875

Contact us