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Table 3 Identified motifs in PfCoSP using MEME tool and their matched sequences found in protein sequence database by find individual motif occurrence (FIMO)

From: Pleiotropic roles of cold shock proteins with special emphasis on unexplored cold shock protein member of Plasmodium falciparum

 

MOTIF LOGO

Matched sequence by FIMO

Protein family

Biological function

1

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WNFAYDITQ

Site specific DNA methytransferases

They catalyze the transfer of a methyl group to DNA. DNA methylation is one of several epigenetic mechanisms that cells use to control gene expression

2

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LVRGIR

Phosphatidylinositol 4-kinases

Catalyzes phosphorylation of phosphatidylinositol (PI) at the D-4 position, yielding phosphatidylinositol 4-phosphate (PI4P), a lipid that plays important roles in Golgi function, protein sorting and membrane trafficking. Besides, phosphorylation of PI to PI4P is the first step in the generation of phosphatidylinositol 4,5-bisphosphate (PIP2), a precursor of the second messenger inositol 1,4,5-trisphosphate

3

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HFNRYL

Homeobox proteins

Homeobox genes encode homeodomain protein products that bind DNA to regulate expression of target genes

  1. Significant matches of proteins/enzymes for these motifs are mentioned along with their biological function