Table 2 Genetic diversity of msp1 and msp2 genes of P. falciparum isolates from the South (Kedougou) and North (Podor and Matam)
From: Molecular epidemiology of Plasmodium falciparum by multiplexed amplicon deep sequencing in Senegal
Genes | Msp1 | Msp2 | ||
|---|---|---|---|---|
Kedougou | North area | Kedougou | North area | |
No of Isolate | 28 | 23 | 28 | 25 |
Clones (N) | 47 | 29 | 76 | 40 |
Haplotype diversity (Hd) | 0.93 | 0.761 | 0.82 | 0.843 |
Nucleotide diversity | ||||
π | 0.28306 | 0.09457 | 0.48339 | 0.42473 |
θ | 0.24245 | 0.16236 | 0.3534 | 0.37802 |
Tajima's D⁎ test of neutrality | 2.0453* | − 1.46045 | 5.21073* | 3.46684* |
FSTs | 0.19505* | 0.02111 | ||