Fig. 4

Comparison of variant call concordance between experimental conditions and shotgun sequenced reference strains. a High quality biallelic SNP positions from pf3k_5.1 (https://www.malariagen.net/projects/Pf3k) were compared, as in Oyola et al. [13]. b High quality homozygous non-reference variant sites called de novo were compared. SNPs were not called for 10 parasites/μL samples without the addition of McrBC due to the lack of sufficient read depth