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Table 3 Evaluation results of 2D-QSAR models generated by PLS (Partial least squares) and PCR (Principal component regression) methods

From: 2D-quantitative structure–activity relationships model using PLS method for anti-malarial activities of anti-haemozoin compounds

 

Model 1 (PLS)

Model 2 (PCR)

With outliers

Without outliers

With outliers

Without outliers

Regression equation

pIC50 = 0.04406 – 1.17564 × a_ICM + 4.80603 × GCUT_SLOGP_2 + 0.46880 × h_pavgQ + 0.00334 * PEOE_VSA-0 + 0.29021 × rsynth

pIC50 =  − 4.90988 + 1.98542 × a_ICM + 0.74756 × GCUT_SLOGP_2 + 0.59815 × h_pavgQ + 0.00837 × PEOE_VSA-0 – 0.12277 × rsynth

pIC50 = 0.04406 – 1.17564 × a_ICM + 4.80603 × GCUT_SLOGP_2 + 0.46880 × h_pavgQ + 0.00334 × PEOE_VSA-0 + 0.29021 × rsynth

pIC50 =  −4 .95576 + 2.02008 × a_ICM + 0.19451 × GCUT_SLOGP_2 + 0.56938 × h_pavgQ + 0.00850 × PEOE_VSA-0 – 0.01478 × rsynth

R2

0.587642

0.745031

0.587642

0.738223

RMSE

0.392729

0.166261

0.392729

0.168465

Q2

0.025752

0.316410

0.025752

0.317759

R2_pred

0.773600

0.955400

0.773600

0.954200