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Table 2 Plasmodium falciparum loci identified by DeepSweep (DS; with > 6 SNPs)

From: Using deep learning to identify recent positive selection in malaria parasite sequence data

Chr

Gene ID (PF3D7_)

DS

hits

iHS hits

Rsb hits

6

627800*

20

11

39

6

628100*

18

1

30

5

522400**

13

 

8

7

709100**

11

 

38

7

708200**

9

 

14

8

809600**

9

3

29

4

417400**

8

 

37

5

522900**

8

  

12

1223500*

8

 

11

7

709300**

7

 

46

8

811200**

7

 

11

  1. Chr Chromosome; iHS and Rsb counts defined as the number of SNPs in a gene that have an |iHS| or |Rsb| score with a p-value < 0.0001; pfdhfr (Chr. 4: 749,001, pfmdr1 (Chr. 5: 960,020), pfcrt (Chr. 7: 404,770), pfdhps (Chr. 8: 549,408; * previously identified; ** close to known gene
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Malaria Journal

ISSN: 1475-2875

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