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Table 3 Plasmodium vivax loci identified by DeepSweep (DS; with > 6 SNPs)

From: Using deep learning to identify recent positive selection in malaria parasite sequence data

Chr

Gene ID

(PVP01_)

DS

Hits

iHS

hits

Rsb

hits

14

1430700

21

  

5

526800**

19

4

12

11

1101300

14

 

2

14

1428700**

13

1

5

2

202000

11

 

4

7

709800

11

 

0

10

1011000**

11

 

1

14

1432900

11

1

1

5

526400**

10

1

12

7

701100

10

 

8

9

948800

10

 

5

5

526300**

9

2

4

10

1034400

9

  

12

1271500

8

  

2

203000*

7

 

33

9

939900

7

2

1

10

1033900

7

  

13

1317300

7

 

15

14

1418100

7

 

1

  1. Chr Chromosome, iHS and Rsb Counts defined as the number of SNPs in a gene that have an iHS or Rsb score with a p-value < 0.0001; pvdhfr (Chr. 5), pvmdr1 (Chr. 10), pvdhps (Chr. 14); * previously identified; ** close to known gene