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Table 4 The frequency of variants in the Rh5 complex genes identified by CS and WGS

From: The Plasmodium falciparum Rh5 invasion protein complex reveals an excess of rare variant mutations

Gene

Position

S/NS/Indel

Frequency

Gene

Position

S/NS/Indel

Frequency

CS

WGS

CS

WGS

Rh5

Rh5_42

NS

2.3#

0

CyRPA

CyRPA_101

S

0

4.1

Rh5_147*

NS

20.5

22.6

CyRPA_160*

NS

0

0.7#

Rh5_148*

NS

20.5

22.6

CyRPA_165*

NS

2.2

0.7#

Rh5_203*

NS

13.6

10.3

CyRPA_229

NS

0

1.4#

Rh5_365*

NS

0

0.7#

CyRPA_235*

NS

0

0.7

Rh5_371*

NS

0

4.1

CyRPA_236

NS

0

3.4#

Rh5_389*

NS

0

0.7#

CyRPA_270*

NS

0

2.8

Rh5_407*

NS

0

0.7#

CyRPA_271*

NS

2.3

0

Rh5_410*

NS

4.6

3.4

CyRPA_292*

NS

1.2#

0

Rh5_429*

NS

29.6

34.9

CyRPA_302*

NS

1.2#

2.1

Rh5_439*#

NS

0

1.4

CyRPA_17*

NS

0

0.7#

P113

p113_5*

NS

0

1.4

CyRPA_19*

NS

0

0.7#

p113_7*

S

0

5.1#

Ripr

RIPR_3

NS

0

1.4

p113_234*

NS

1.1

1.4

RIPR_66*

NS

0

0.7#

p113_267*

NS

4.4

7.5

RIPR_119

NS

0

0.7#

p113_275_3N

Indel

2.2

0

RIPR_190*

NS

7.6

10.3

p113_275_6N

Indel

72.5

0

RIPR_215*

NS

0

2.7

p113_275_7N

Indel

1.1

0

RIPR_220

NS

1.5

0

p113_275_8N

Indel

23.1

0

RIPR_226*

NS

3.0

0

p113_275_9N

Indel

1.1

0

RIPR_228*

S

0

0.7#

p113_310

NS

3.3

3.4

RIPR_255

NS

1.5

2.8

p113_330*

NS

1.1#

0

RIPR_259*

NS

27.3

23.6

p113_345*

S

0

1.4#

RIPR_327*

NS

4.6

3.4

p113_381*

S

0

0.7#

RIPR_429

NS

0

0.7#

p113_421*

NS

1.1#

0

RIPR_436*

NS

0

0.7#

p113_453*

S

0

1.4#

RIPR_438*

NS

0

0.7#

p113_478

NS

0

0.7#

RIPR_524*

NS

12.1

0.7#

p113_485*

NS

0

1.4#

RIPR_564

NS

1.5#

0

p113_620

NS

3.3

0

RIPR_587

NS

1.5

0

p113_713*

NS

2.2

0

RIPR_744*

S

0

0.7#

p113_716

NS

2.2#

0

RIPR_843

NS

0

1.4

p113_750

S

0

0.7#

RIPR_858*

NS

0

0.7#

p113_758*

NS

1.1

2.1

RIPR_883*

NS

0

0.7#

p113_849

NS

1.1#

0

RIPR_985*

NS

12

8.9

p113_859_2E

Indel

3.3

0

RIPR_995*

NS

0

1.4#

p113_859_3E

Indel

96.7

0

RIPR_1003*

NS

15.4

10.3

p113_912*

NS

0

1.4#

RIPR_1039*

NS

12

2.7

p113_935*

NS

0

0.7#

     
  1. CyRPA: 12 SNPs, p113: 27 SNPs, Ripr: 25 SNPs and Rh5: 11 SNPs. SNPs that were identified by either CS or WGS and present in the global MalariaGEN dataset are indicated by an asterix* and singleton SNPs are indicated by a hash #