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Table 6 The computational time (seconds) of the estimated haplotype frequencies across statistical methods and four conditions of LoDSNP (30%, 20%, 10%, 0%) and LoDMOI (15%, 10%, 5%, 0%)

From: Markov chain Monte Carlo Gibbs sampler approach for estimating haplotype frequencies among multiple malaria infected human blood samples

  MHF R-EM Bayesian EM MCMC Gibbs
(LoDSNP/LoDMOI)       
 0/0 29.8 517.5 3.5 19.9 5.4 25.5
 0.10/0.05 31.1 353.6 3.4 1.9 5.2 19.2
 0.20/0.10 25.6 227.5 3.3 1.3 4.8 13.1
 0.30/0.15 23.4 127.7 3.1 0.9 4.4 8.7
  1. Lower value represents faster calculation
  2. MHF MalHaploFreq, R-EM malaria em, Bayesian Bayesian statistic, EM EM algorithm, MCMC Markov chain Monte Carlo, Gibbs Gibbs sampler, LoD limit of detection, SNP single nucleotide polymorphisms, MOI multiplicity of infection