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Table 2 A summary of the papers which were analysed in this systematic literature review, detailing which molecular markers were detected following treatment, and any changes in the frequency of molecular markers investigated

From: How has mass drug administration with dihydroartemisinin-piperaquine impacted molecular markers of drug resistance? A systematic review

Molecular marker associated with DHA-PPQ resistance

Associated trial(s)

Intervention

Publication

Impact of intervention on molecular marker

Pfpm2 copy number

Samples from multiple trials and epidemiological studies conducted between 1st Jan 2007 and 31st December 2018 were analysed by Imwong et al. (2020).

Therapeutic efficacy studies of artesunate [50] and DHA-PPQ in Yunnan Province of China, from 2009 to 2012

Multiple trials and epidemiological studies, including MDA with DHA-PPQ in Kayin State, Myanmar

Imwong et al. (2020) [51] Molecular epidemiology of resistance to antimalarial drugs in the Greater Mekong subregion: an observational study

This study found that between Jan 1 2007 and Dec 31 2018, pfpm2 amplification was more frequent in the eastern Grater Mekong subregion than in Myanmar. Regarding mass drug administration, there was no evidence of selection for increased pfpm2 copy number following MDA with DHA-PPQ in Myanmar and Cambodia

NCT02914145

Mass Drug Administration of Monthly DHA-PQP to Accelerate Towards Malaria Elimination in Magude District, Southern Mozambique

Mass Drug Administration with DHA-PPQ. Two monthly rounds of MDA with DHA-PPQ for two consecutive years in Magude, Southern Mozambique

Gupta et al. (2020) [52] Effect of mass dihydroartemisinin–piperaquine administration in southern Mozambique on the carriage of molecular markers of antimalarial resistance

There was no statistically significant difference in the proportion of isolates with multicopy pfpm2 when comparing samples collected pre and post MDA

NCT02282293

Reducing the Burden of Malaria in HIV-Infected Pregnant Women and Their HIV-Exposed Children (PROMOTE Birth Cohort 2)

Randomized controlled trial among 300 pregnant women in Uganda. Participants were randomized to receive either: (i) SP (500 mg Sulphadoxine and 25 mg pyrimethamine) every 8 weeks (ii) DHA-PPQ (40 mg dihydroartemisinin and 320 mg PQ) every 8 weeks or (iii) DHA-PPQ every 4 weeks

Conrad et al. (2017) [53] Impact of Intermittent Preventive Treatment During Pregnancy on Plasmodium falciparum Drug Resistance–Mediating Polymorphisms in Uganda

This study found a modest increase in pfpm2 copy number in 1 of 18 samples from patients receiving DHA-PPQ IPTp

NCT01872702

Targeted Chemo-elimination (TCE) to Eradicate Malaria in Areas of Suspected or Proven Artemisinin Resistance in Southeast Asia and South Asia

Active comparator: Three monthly rounds of DHA-PPQ and low dose primaquine

Placebo comparator: No intervention used

Two villages randomly allocated to intervention at each of 4 sites, and two villages randomly allocated to control (no intervention). 500 people per village

von Seidlein et al., (2019) [54] The impact of targeted malaria elimination with mass drug administrations on falciparum malaria in Southeast Asia: A cluster randomized trial

This study analysed blood specimens from before MDA initiation. They found that 4% of the individuals sampled (10 of 269) had pfkelch13 C580Y and multiple copies of pfpm2/3. This study did not measure the difference in prevalence of markers pre and post MDA

Landier et al. (2017) [55] Safety and effectiveness of mass drug administration to accelerate elimination of artemisinin-resistant falciparum malaria: a pilot trial in four villages of Eastern Myanmar

This study found no amplification of pfpm2 copy number in the 69 samples that they analysed, which were 53 collected before the MDA and 16 collected afterwards

NCT02083380

Randomizedd Phase IIb Study of Efficacy, Safety, Tolerability & Pharmacokinetics of a Single Dose Regimen of Artefenomel (OZ439) in Loose Combination With Piperaquine in Adults and Children With Uncomplicated Plasmodium falciparum Malaria

Experimental: A) Artefenomel 800 mg and Piperaquine Phosphate 640 mg

Experimental: B) Artefenomel 800 mg and Piperaquine Phosphate 960 mg

Experimental: C) Artefenomel 800 mg and Piperaquine Phosphate 1440 mg

Leroy et al. (2019) [56] African isolates show a high proportion of multiple copies of the Plasmodium falciparum plasmepsin-2 gene, a piperaquine resistance marker

This study analysed pfpm2 copy number in samples collected from patients before treatment. They found a higher proportion of multicopy parasites in African samples compared to Asian samples. Parasites with multicopy pfpm2 and single copy pfmdr1 (hypothesized to favour PPQ resistance) were found at similar prevalence in Asian and African samples

Samples from multiple trials and epidemiological studies were analysed by Imwong et al. (2017). Those that were trials that included PPQ or DHA-PPQ were NCT02453308

Longitudinal observational study between 1st January 2008 and 31st December 2015

Imwong et al. (2017) [57] The spread of artemisinin-resistant Plasmodium falciparum in the Greater Mekong subregion: a molecular epidemiology observational study

This study found pfpm2 amplification in isolates collected between 1st January and 31st December 2008, in western Cambodia and north-eastern Thailand. Pfpm2 amplification was only observed in parasites with the C580Y ‘long haplotype’

Pfexo E415G mutation

NCT02282293

Reducing the Burden of Malaria in HIV-Infected Pregnant Women and Their HIV-Exposed Children (PROMOTE Birth Cohort 2)

Randomizedcontrolled trial among 300 pregnant women in Uganda. Participants were randomizedd to receive either: (i) SP (500 mg Sulphadoxine and 25 mg pyrimethamine) every 8 weeks, (ii) DHA-PPQ (40 mg dihydroartemisinin and 320 mg PQ) every 8 weeks, or (iii) DHA-PPQ every 4 weeks

Conrad et al. (2017) [53] Impact of Intermittent Preventive Treatment During Pregnancy on Plasmodium falciparum Drug Resistance–Mediating Polymorphisms in Uganda

Conrad et al.sequenced a 395 bp amplicon surrounding the E415G locus but did not find the E415G mutation in the samples that they analysed. They detected a different non-synonymous mutation in pfexo, R346T, in 1 of 19 samples collected from patients receiving DHA-PPQ treatment

NCT02788864

A Randomized, Placebo-controlled, Double-blind Trial Using Dihydroartemisinin and Piperaquine (DHA-PPQ) to Protect Forest Workers From Malaria in Bu Gia Map National Park

Active comparator: DHA-PPQ for 3 days prior to forest visit

Placebo comparator: Placebo for 3 days prior to forest visit

150 participants

Son et al. (2017) [58] The prevalence, incidence and prevention of Plasmodium falciparum infections in forest rangers in Bu Gia Map National Park, Binh Phuoc province, Vietnam: a pilot study

This study found that before MDA, 11 out of 30 samples had the E415G mutation. Following MDA and returning from working in the forest, two study participants were infected with P. falciparum. One in the DHA-PPQ arm and one in the placebo arm. The participant in the placebo arm was infected with wild-type P. falciparum when they entered the forest, but the E415G mutation when they returned

Pfcrt mutations

NCT02793622

Prevention of Malaria in HIV-uninfected Pregnant Women and Infants

IPTp during pregnancy:

Active comparator arm: Monthly SP during pregnancy

Active comparator arm: Monthly DHA-PPQ during pregnancy

782 participants

Nayebare et al. (2020) [59] Associations between Malaria-Preventive Regimens and Plasmodium falciparum Drug Resistance-Mediating Polymorphisms in Ugandan Pregnant Women

This study found that pfcrt K76T was more prevalent in parasites collected while women received IPTp with DHA-PPQ, than in parasites collected before the start of IPTp, or while women received IPTp with SP

Samples from multiple trials and epidemiological studies conducted between 1st Jan 2007 and 31st December 2018 were analysed by Imwong et al. (2020).

Therapeutic efficacy studies of artesunate [50] and DHA-PPQ in Yunnan Province of China, from 2009 to 2012

Multiple trials and epidemiological studies, including MDA with DHA-PPQ in Kayin State, Myanmar

Imwong et al. (2020) [51] Molecular epidemiology of resistance to antimalarial drugs in the Greater Mekong subregion: an observational study

This study found no evidence for selection of pfcrt mutations associated with piperaquine resistance following MDA with DHA-PPQ in Kayin State, Myanmar, or in Cambodia

NCT02914145

Mass Drug Administration of Monthly DHA-PQP to Accelerate Towards Malaria Elimination in Magude District, Southern Mozambique

Mass Drug Administration with DHA-PPQ. Two monthly rounds of MDA with DHA-PPQ for two consecutive years in Magude, Southern Mozambique

Gupta et al. (2020) [52] Effect of mass dihydroartemisinin–piperaquine administration in southern Mozambique on the carriage of molecular markers of antimalarial resistance

This study found no statistically significant difference between the frequency of pfcrt polymorphisms when comparing samples collected before and after MDA

NCT02282293

Reducing the Burden of Malaria in HIV-Infected Pregnant Women and Their HIV-Exposed Children (PROMOTE Birth Cohort 2)

Randomized controlled trial among 300 pregnant women in Uganda. Participants were randomizedto receive either: (i) SP (500 mg Sulphadoxine and 25 mg pyrimethamine) every 8 weeks, (ii) DHA-PPQ (40 mg dihydroartemisinin and 320 mg PQ) every 8 weeks, or (iii) DHA-PPQ every 4 weeks

Wallender et al. (2019) [60] Modelling Prevention of Malaria and Selection of Drug Resistance with Different Dosing Schedules Dihydroartemisinin-Piperaquine Preventive Therapy during Pregnancy in Uganda

This study used non-linear mixed effects modelling to describe the relationship between PPQ concentration and the probability of finding the mutation N86Y in pfmdr1 and K76T in pfcrt. The models predicted that higher median PPQ concentrations would be required to prevent infections with mutant haplotypes compared to wild-type haplotypes

Conrad et al. (2017) [53] Impact of Intermittent Preventive Treatment During Pregnancy on Plasmodium falciparum Drug Resistance–Mediating Polymorphisms in Uganda

Treatment with DHA-PPQ was associated with increased prevalence of pfcrt K76T compared with samples collected before treatment, or treatment with SP. Selection increased with increasing PPQ exposure. Receipt of DHA-PPQ selected for the pfcrt 76T-mdr1 N86-184F-1246D haplotype

NCT00527800

Interactions Between HIV and Malaria in African Children

5 year longitudinal trial from 2007 to 2012 in Tororo, Uganda

Experimental arm 1: Treatment for episodes of uncomplicated malaria with DHA-PPQ, once daily for 3 days

Comparator arm 2: Treatment for uncomplicated malaria with artemether-lumefantrine, twice daily for 3 days

Experimental A: Prevention of malaria in HIV uninfected, exposed children, with trimethoprim-sulfamethoxazole

No intervention B: Prevention of malaria in HIV uninfected, exposed children

Conrad et al. (2014) [42] Comparative Impacts Over 5 Years of Artemisinin-Based Combination Therapies on Plasmodium falciparum Polymorphisms That Modulate Drug Sensitivity in Ugandan Children

Treatment over time with DHA-PPQ or AL was associated with higher prevalences of wildtype K76. The extent of selection was lower than that with recent treatment with AL

NCT00941785

Randomized Trial of the Efficacy, Safety, Tolerability and Pharmacokinetics of Dihydroartemisinin-piperaquine for Seasonal IPT to Prevent Malaria in Children Under 5 Years

Experimental: Three monthly rounds of DHA-PPQ in August, September and October

Active comparator: Three monthly rounds of Sulphadoxine-Pyrimethamine plus Amodiaquine

1500 particpants

Zongo et al. (2015) [61] Randomized Noninferiority Trial of Dihydroartemisinin-Piperaquine Compared with Sulphadoxine-Pyrimethamine plus Amodiaquine for Seasonal Malaria Chemoprevention in Burkina Faso

This study found no significant difference in prevalence of the pfcrt mutation K76T following SMC with DHA-PPQ

Somé et al. (2014) [62] Selection of Drug Resistance-Mediating Plasmodium falciparum Genetic Polymorphisms by Seasonal Malaria Chemoprevention in Burkina Faso

This study measured the prevalence of mutations in parasites collected before the initiation of the intervention, a month after the completion of three-monthly treatments, and from a control group of children not subject to the intervention. They found no significant selection of pfcrt K76T following treatment with DHA-PPQ

NCT00948896 and NCT00978068

Experimental arm 1: TS; TMP/SMX given daily

Experimental arm 2: SP given monthly as a single dose

Experimental arm 3: DHA-PPQ given monthly, once a day for 3 consecutive days

Arm 4, no intervention

Tumwebaze et al. (2015) [63] Impact of antimalarial treatment and chemoprevention on the drug sensitivity of malaria parasites isolated from Ugandan children

This study found minor differences in the prevalence of SNPs associated with drug resistance between different trial arms. Monthly DHA-PPQ treatment was not associated with polymorphisms in pfcrt

Pfmdr1 polymorphisms

NCT02793622

Prevention of Malaria in HIV-uninfected Pregnant Women and Infants

IPTp during pregnancy:

Active comparator arm: Monthly SP during pregnancy

Active comparator arm: Monthly DHA-PPQ during pregnancy

782 participants

Nayebare et al. (2020) [59] Associations between Malaria-Preventive Regimens and Plasmodium falciparum Drug Resistance-Mediating Polymorphisms in Ugandan Pregnant Women

This study found that pfmdr1 N86Y and Y184F were more prevalent in parasites collected while women received IPTp with DHA-PPQ, than in parasites collected before the start of IPTp, or while women received IPTp with SP. The prevalence of D1246Y was similar in parasites collected before and after IPTp

NCT02914145

Mass Drug Administration of Monthly DHA-PQP to Accelerate Towards Malaria Elimination in Magude District, Southern Mozambique

Mass Drug Administration with DHA-PPQ. Two monthly rounds of MDA with DHA-PPQ for two consecutive years in Magude, Southern Mozambique

Gupta et al. (2020) [52] Effect of mass dihydroartemisinin–piperaquine administration in southern Mozambique on the carriage of molecular markers of antimalarial resistance

This study found no evidence of statistically significant differences in pfmdr1 polymorphisms, including pfmdr1 copy number, when comparing samples collected before and after MDA

Samples from multiple trials and epidemiological studies conducted between 1st Jan 2007 and 31st December 2018 were analysed by Imwong et al. (2020).

Therapeutic efficacy studies of artesunate [50] and DHA-PPQ in Yunnan Province of China, from 2009 to 2012

Multiple trials and epidemiological studies, including MDA with DHA-PPQ in Kayin State, Myanmar

Imwong et al. (2020) [51] Molecular epidemiology of resistance to antimalarial drugs in the Greater Mekong subregion: an observational study

This study found that pfmdr1 amplification is at low prevalence across the Greater Mekong subregion

NCT02083380

Randomized Phase IIb Study of Efficacy, Safety, Tolerability & Pharmacokinetics of a Single Dose Regimen of Artefenomel (OZ439) in Loose Combination With Piperaquine in Adults and Children With Uncomplicated Plasmodium falciparum Malaria

Experimental: A) Artefenomel 800 mg and Piperaquine Phosphate 640 mg

Experimental: B) Artefenomel 800 mg and Piperaquine Phosphate 960 mg

Experimental: C) Artefenomel 800 mg and Piperaquine Phosphate 1440 mg

Leroy et al. (2019) [56] African isolates show a high proportion of multiple copies of the Plasmodium falciparum plasmepsin-2 gene, a piperaquine resistance marker

This study analysed pfmdr1 copy number in samples collected from patients before treatment. They found a threefold higher prevalence of multicopy pfmdr1 in Africa than in Asia. Parasites with multicopy pfpm2 and single copy pfmdr1 (which is hypothesized to favour PPQ resistance) were found at similar prevalence in Asian and African samples

NCT02282293

Reducing the Burden of Malaria in HIV-Infected Pregnant Women and Their HIV-Exposed Children (PROMOTE Birth Cohort 2)

Randomized controlled trial among 300 pregnant women in Uganda. Participants were randomized to receive either: (i) SP (500 mg Sulphadoxine and 25 mg pyrimethamine) every 8 weeks, (ii) DHA-PPQ (40 mg dihydroartemisinin and 320 mg PQ) every 8 weeks, or (iii) DHA-PPQ every 4 weeks

Wallender et al. (2019) [60] Modelling Prevention of Malaria and Selection of Drug Resistance with Different Dosing Schedules Dihydroartemisinin-Piperaquine Preventive Therapy during Pregnancy in Uganda

This study used non-linear mixed effects modelling to describe the relationship between PPQ concentration and the probability of finding the mutation N86Y in pfmdr1 and K76T in pfcrt. The models predicted that higher median PPQ concentrations would be required to prevent infections with mutant haplotypes compared to wild-type haplotypes

Conrad et al. (2017) [53] Impact of Intermittent Preventive Treatment During Pregnancy on Plasmodium falciparum Drug Resistance–Mediating Polymorphisms in Uganda

Treatment with DHA-PPQ was associated with increased prevalence of pfmdr1 N86Y and Y184F mutations compared with before treatment, or treatment with SP. Increased frequency of DHA-PPQ exposure was associated with increased prevalence of pfmdr1 N86Y. Treatment with DHA-PPQ was associated with decreased prevalence of D1246Y compared with samples collected before treatment, or treatment with SP. DHA-PPQ treatment selected for the pfmdr1 86Y-184F, 86Y-D1246, N86-184F-1246D and the pfcrt 76T-mdr1 N86-184F-1246D haplotypes. Consistent with this, a generalized linear model of PPQ exposure demonstrated that increasing PPQ concentration was associated with increasing prevalence of N86Y. There was no evidence of increased pfmdr1 copy number associated with DHA-PPQ treatment

NCT02788864

A Randomized, Placebo-controlled, Double-blind Trial Using Dihydroartemisinin and Piperaquine (DHA-PPQ) to Protect Forest Workers From Malaria in Bu Gia Map National Park

Active comparator: DHA-PPQ for 3 days prior to forest visit

Placebo comparator: Placebo for 3 days prior to forest visit 150 participants

Son et al. (2017) [58] The prevalence, incidence and prevention of Plasmodium falciparum infections in forest rangers in Bu Gia Map National Park, Binh Phuoc province, Vietnam: a pilot study

This study found that before MDA, no P. falciparum isolates that were genotyped had multiple copies of pfmdr1. Following MDA and returning from working in the forest, two study participants were infected with P. falciparum. Neither had multicopy pfmdr1

NCT00941785

Randomized Trial of the Efficacy, Safety, Tolerability and Pharmacokinetics of Dihydroartemisinin-piperaquine for Seasonal IPT to Prevent Malaria in Children Under 5 Years

Experimental: Three monthly rounds of DHA-PPQ in August, September and October

Active comparator: Three monthly rounds of Sulphadoxine-Pyrimethamine plus Amodiaquine

1500 participants

Zongo et al. (2015) [61] Randomized Noninferiority Trial of Dihydroartemisinin-Piperaquine Compared with Sulphadoxine-Pyrimethamine plus Amodiaquine for Seasonal Malaria Chemoprevention in Burkina Faso

This study found no significant difference in the prevalence of pfmdr1 mutations N86Y, F184Y or D1246Y following SMC with DHA-PPQ

Somé et al. (2014) [62] Selection of Drug Resistance-Mediating Plasmodium falciparum Genetic Polymorphisms by Seasonal Malaria Chemoprevention in Burkina Faso

Measured the prevalence of mutations in parasites collected from children before the initiation of the intervention, from children a month after the completion of three-monthly treatments, and from a control group of children not subject to the intervention. They found borderline significant selection for pfmdr1 D1246Y following treatment with DHA-PPQ

NCT00527800

Interactions Between HIV and Malaria in African Children

5 year longitudinal trial from 2007 to 2012 in Tororo, Uganda

Experimental arm 1: Treatment for episodes of uncomplicated malaria with DHA-PPQ, once daily for 3 days

Comparator arm 2: Treatment for uncomplicated malaria with artemether-lumefantrine, twice daily for 3 days

Experimental A: Prevention of malaria in HIV uninfected, exposed children, with trimethoprim-sulfamethoxazole

No intervention B: Prevention of malaria in HIV uninfected, exposed children

Taylor et al. (2016) [64] Artemether-Lumefantrine and Dihydroartemisinin-Piperaquine Exert Inverse Selective Pressure on Plasmodium falciparum Drug Sensitivity-Associated Haplotypes in Uganda

This study fit a haplotype frequency estimation model to study pfmdr1 N86Y, Y184F and D1246Y alleles. They found that DHA-PPQ selected for 86Y, but only when this was combined with Y184 and 1246Y, selecting for the haplotype YYY, and against haplotypes NFD and NYY

Conrad et al. (2014) [42] Comparative Impacts Over 5 Years of Artemisinin-Based Combination Therapies on Plasmodium falciparum Polymorphisms That Modulate Drug Sensitivity in Ugandan Children

The prevalences of N86, 184F and D1246 increased over the time of the study. When comparing the AL and DHA-PPQ treatment arms, the prevalences of these alleles was greater in the AL treatment arm. Recent treatment with DHA-PPQ was associated with increased prevalence of pfmdr1 N86Y, D1246Y and a lower prevalence of Y184F. The extent of selection was lower than that with recent treatment with AL. There was no association between treatment arm and pfmdr1 copy number

NCT00948896

A Randomized Controlled Trial of Monthly Dihydroartemisinin-piperaquine Versus Monthly Sulfadoxine-pyrimethamine Versus Daily Trimethoprim-sulfamethoxazole Versus No Therapy for the Prevention of Malaria

Experimental arm 1: TS; TMP/SMX given daily

Experimental arm 2: SP given monthly as a single dose

Experimental arm 3: DHA-PPQ given monthly, once a day for 3 consecutive days

Arm 4, no intervention

Tumwebaze et al. (2015) [63] Impact of antimalarial treatment and chemoprevention on the drug sensitivity of malaria parasites isolated from Ugandan children

This study found minor differences in the prevalence of SNPs associated with drug resistance between different trial arms. Monthly DHA-PPQ treatment was not associated with polymorphisms in pfmdr1. However, when samples from the DHA-PPQ treatment arm were sorted based on circulating PPQ levels, parasites with higher PPQ exposure showed evidence for selection for pfmdr1 86Y and 1246Y mutations

Ochong et al. (2013) [65] Fitness Consequences of Plasmodium falciparum pfmdr1Polymorphisms Inferred from Ex Vivo Culture of Ugandan Parasites

This study did not measure changes in molecular markers of resistance in trial participants; this study cultured parasites from participants to evaluate fitness advantages of certain pfmdr1 polymorphisms. Their results suggest fitness advantages for parasites with the pfmdr1 N86Y mutation and wild-type D1246Y

Artemisinin-resistance associated mutations

NCT02914145

Mass Drug Administration of Monthly DHA-PQP to Accelerate Towards Malaria Elimination in Magude District, Southern Mozambique

Mass Drug Administration with DHA-PPQ. Two monthly rounds of MDA with DHA-PPQ for two consecutive years in Magude, Southern Mozambique

Gupta et al. (2020) [52] Effect of mass dihydroartemisinin–piperaquine administration in southern Mozambique on the carriage of molecular markers of antimalarial resistance

There was no statistically significant difference between the frequency of polymorphisms when comparing samples collected pre and post MDA. No pfkelch13 polymorphisms associated with partial-resistance to artemisinin were found in the isolates analyzed

Samples from multiple trials and epidemiological studies conducted between 1st Jan 2007 and 31st December 2018 were analysed by Imwong et al. (2020).

Therapeutic efficacy studies of artesunate[50] and DHA-PPQ in Yunnan Province of China, from 2009 to 2012

Multiple trials and epidemiological studies, including MDA with DHA-PPQ in Kayin State, Myanmar

Imwong et al. (2020) [51] Molecular epidemiology of resistance to antimalarial drugs in the Greater Mekong subregion: an observational study

The longitudinal study found that two genotypes of pfkelch have come to dominate: the Cys580Tyr mutation in the eastern Greater Mekong subregion, and the Phe446Ile mutation in Myanmar. They found no evidence for further selection of pfkelch mutations following mass treatment with DHA-PPQ

NCT01872702

Targeted Chemo-elimination (TCE) to Eradicate Malaria in Areas of Suspected or Proven Artemisinin Resistance in Southeast Asia and South Asia

Active comparator: Three monthly rounds of DHA-PPQ and low dose primaquine

Placebo comparator: No intervention used

Two villages randomly allocated to intervention at each of 4 sites, and two villages randomly allocated to control (no intervention). 500 people per village

von Seidlein et al. (2019) [54] The impact of targeted malaria elimination with mass drug administrations on falciparum malaria in Southeast Asia: A cluster randomized trial

This study analysed blood specimens from before MDA initiation. They found that 4% of the individuals sampled (10 of 269) had pfkelch13 C580Y and multiple copies of pfpm2/3. This study did not measure the difference in prevalence of markers pre and post MDA. 9/10 of the participants with the C580Y genotyped parasites cleared their parasitaemia after receiving the MDA

Tripura et al. (2018) [66] A Controlled Trial of Mass Drug Administration to Interrupt Transmission of Multidrug-Resistant Falciparum Malaria in Cambodian Villages

This study found that all genotyped Plasmodium infections carried the pfkelch13 C580Y mutation. Of isolates genotyped up to April 2016, 34 had the C580Y mutation and 1 had the F446I mutation

Landier et al. (2017) [55] Safety and effectiveness of mass drug administration to accelerate elimination of artemisinin-resistant falciparum malaria: A pilot trial in four villages of Eastern Myanmar

This study measured the prevalence of pfkelch13 mutations before and after MDA. They found that the prevalence was 85.6% before and 56.7% afterwards. The most frequent mutations were C580Y and G358V

NCT number not available

Large-scale Artemisinin-Piperaquine Mass Drug Administration with or Without Primaquine, Anjouan Island, Union of Comoros

Artemisinin-piperaquine (AP), with or without primaquine, was given in 3 monthly rounds as MDA

Deng et al. (2018) [67] Large-scale Artemisinin–Piperaquine Mass Drug Administration With or Without Primaquine Dramatically Reduces Malaria in a Highly Endemic Region of Africa

This study found no evidence for the selection of pfkelch mutations in the analysis of 52 malaria samples collected following MDA with artemisinin-piperaquine (with or without PMQ)

NCT02282293

Reducing the Burden of Malaria in HIV-Infected Pregnant Women and Their HIV-Exposed Children (PROMOTE Birth Cohort 2)

Randomized controlled trial among 300 pregnant women in Uganda. Participants were randomized to receive either (i) SP (500 mg Sulphadoxine and 25 mg pyrimethamine) every 8 weeks (ii) DHA-PPQ (40 mg dihydroartemisinin and 320 mg PQ) every 8 weeks or (iii) DHA-PPQ every 4 weeks

Conrad et al. (2017) [53] Impact of Intermittent Preventive Treatment During Pregnancy on Plasmodium falciparum Drug Resistance-Mediating Polymorphisms in Uganda

This study found no evidence for the selection of pfkelch13 mutations between treatment groups

NCT02083380

Randomized Phase IIb Study of Efficacy, Safety, Tolerability & Pharmacokinetics of a Single Dose Regimen of Artefenomel (OZ439) in Loose Combination With Piperaquine in Adults and Children With Uncomplicated Plasmodium falciparum Malaria

Experimental: A) Artefenomel 800 mg and Piperaquine Phosphate 640 mg

Experimental: B) Artefenomel 800 mg and Piperaquine Phosphate 960 mg

Experimental: C) Artefenomel 800 mg and Piperaquine Phosphate 1440 mg

Leroy et al. (2019) [56] African isolates show a high proportion of multiple copies of the Plasmodium falciparum plasmepsin-2 gene, a piperaquine resistance marker

This study analysed samples collected from patients before treatment. They found that 67.6% of isolates genotyped from Vietnam had pfkelch13 resistance mutations. In contrast, none of the 332 isolates successfully genotyped from African patients carried validated or candidate pfkelch13 mutations

Macintyre et al. (2017) [68] A randomised, double-blind clinical phase II trial of the efficacy, safety, tolerability and pharmacokinetics of a single dose combination treatment with artefenomel and piperaquine in adults and children with uncomplicated Plasmodium falciparum malaria

This study analysed pfkelch13 mutations and found a high mutation frequency in Vietnam of 70.1%. Five mutations were detected, including C580Y, I543T, P553L and V568G, all associated with artemisinin partial resistance, and C469P, which is not associated with artemisinin partial resistance. The presence of these mutations was associated with parasite clearance half-life. The most common pfkelch13 genotypes were C580Y and P553L

Samples from multiple trials and epidemiological studies were analysed by Imwong et al. (2017). Those that were trials that included PPQ or DHA-PPQ were NCT02453308

Longitudinal observational study between 1st January 2008 and 31st December 2015

Imwong et al. (2017) [57] The spread of artemisinin-resistant Plasmodium falciparum in the Greater Mekong subregion: a molecular epidemiology observational study

This study found that over a large area of the Greater Mekong subregion, a single long haplotype pfkelch C580Y mutant lineage has come to dominate

NCT02788864

A Randomized, Placebo-controlled, Double-blind Trial Using Dihydroartemisinin and Piperaquine (DHA-PPQ) to Protect Forest Workers From Malaria in Bu Gia Map National Park

Active comparator: DHA-PPQ for 3 days prior to forest visit

Placebo comparator: Placebo for 3 days prior to forest visit

150 participants

Son et al. (2017) [58] The prevalence, incidence and prevention of Plasmodium falciparum infections in forest rangers in Bu Gia Map National Park, Binh Phuoc province, Vietnam: a pilot study

This study found that before MDA, 11 out of 30 P. falciparum had the C580Y kelch13 mutation. Following MDA and returning from working in the forest, two study participants were infected with P. falciparum. One in the DHA-PPQ arm and one in the placebo arm. The participant in the placebo arm was infected with wild-type P. falciparum when they entered the forest, but the C580Y mutation when they returned