Table 6 Haplotype diversity of the clinical isolate

Sample size

5

3

3

2

13

Number of haplotypes(h)

2

1

1

2

6

Number of nucleotide sites analyzed

671,458

561

539

561,458

671,458,561,539

Haplotype(gene) diversity (hd)

0.312

0.324

0.315

0.302

0.305

Standard deviation of haplotype diversity

0.082

0.73

0.72

0.89

0.078

Nucleotide diversity

0.00242

0.00115

0.00214

0.00131

0.000129

Variance of haplotype diversity

0.00724

0.01342

0.00563

0.00418

0.00363

Tajima’s D statistic

− .0.78621

− 1.7346

− 0.3827

− 1.8317

− 1.74248 (Not significant; P < 0.05)

Fu and Li’s D test statistic

− .0.34123

− 1.7346

− 0.3827

− 1.8317

− .1.74248 (Not significant; P < 0.05)

No of polymorphic sites

2

1

1

2

6