Table 4 Frequency of heterotic models selected and the SNPs showing discordant results between the MAX4 and allelic test for Kenyan malaria datasets
From: Genome-wide association testing in malaria studies in the presence of overdominance
Chr | SNPs | Heterosis | Cut-off | No.Discordant | No. Discordant/1000 |
|---|---|---|---|---|---|
X | 693 | 436 | 0.0000722 | 17 | 39 |
Y | 420 | 302 | 0.0001190 | 14 | 46 |
01 | 1696 | 1228 | 0.0000295 | 12 | 10 |
02 | 1159 | 781 | 0.0000431 | 8 | 10 |
03 | 1029 | 713 | 0.0000486 | 4 | 6 |
04 | 859 | 546 | 0.0000582 | 2 | 4 |
05 | 941 | 615 | 0.0000531 | 5 | 8 |
06 | 1528 | 1100 | 0.0000327 | 8 | 7 |
07 | 980 | 689 | 0.0000510 | 4 | 6 |
08 | 815 | 550 | 0.0000613 | 4 | 7 |
09 | 786 | 526 | 0.0000651 | 1 | 2 |
10 | 985 | 698 | 0.0000508 | 4 | 4 |
11 | 971 | 678 | 0.0000515 | 3 | 4 |
12 | 1060 | 7557 | 0.0000472 | 5 | 7 |
13 | 634 | 426 | 0.0000789 | 6 | 14 |
14 | 520 | 358 | 0.0000962 | 1 | 3 |
15 | 456 | 317 | 0.0001096 | 4 | 13 |
16 | 525 | 389 | 0.0000952 | 0 | 0 |
17 | 558 | 419 | 0.0000896 | 1 | 3 |
18 | 380 | 260 | 0.0001316 | 0 | 0 |
19 | 410 | 292 | 0.0001220 | 1 | 3 |
20 | 378 | 268 | 0.0001323 | 1 | 4 |
21 | 194 | 130 | 0.0002577 | 1 | 8 |
22 | 251 | 175 | 0.0001992 | 0 | 0 |