Population genetic structure of the malaria vector Anopheles nili in sub-Saharan Africa

Ndo, Cyrille; Antonio-Nkondjio, Christophe; Cohuet, Anna; Ayala, Diego; Kengne, Pierre; Morlais, Isabelle; Awono-Ambene, Parfait H; Couret, Daniel; Ngassam, Pierre; Fontenille, Didier; Simard, Frédéric

doi:10.1186/1475-2875-9-161

Malaria Journal

Table 1 Genetic variability at 11 microsatellite loci in nine An. nil i populations from sub-Saharan Africa

From: Population genetic structure of the malaria vector Anopheles nili in sub-Saharan Africa

	Senegal	B. Faso	Ivory C.	Nigeria	Cameroon				DRC	All
Locus	Kedougou	Soumousso	Gansé	Akaka	Tibati	Magba	Mbebe	Simbock	Kenge	samples
	(44)	(40)	(41)	(14)	(41)	(42)	(36)	(42)	(41)	(341)
1D80
Rs	10.52	10.14	10.39	12.43	10.87	10.63	7.62	8.07	6.23	9.99
He	0.918	0.908	0.911	0.952	0.920	0.910	0.831	0.815	0.754	0.880
Fis	0.071	-0.014	0.043	0.048	0.214***	0.123*	-0.102	-0.007	0.072	0.077***
1A27
Rs	12.80	12.42	13.17	13.41	12.70	10.93	11.47	11.36	6.98	12.39
He	0.946	0.943	0.953	0.953	0.949	0.926	0.930	0.930	0.831	0.929
Fis	0.281***	0.245***	0.229***	0.04	0.032	0.144**	0.049	0.182***	0.416***	0.204***
2Ateta
Rs	9.10	9.71	9.03	9.62	9.33	8.49	9.29	8.77	4.55	9.00
He	0.895	0.901	0.876	0.879	0.875	0.866	0.896	0.879	0.395	0.829
Fis	-0.031	0.017	-0.028	-0.146	0.053	0.043	0.165*	0.03	-0.012	0.083***
A14
Rs	5.87	6.63	6.60	4.31	6.34	6.92	5.38	5.47	1.61	5.84
He	0.695	0.745	0.737	0.499	0.732	0.772	0.655	0.675	0.077	0.621
Fis	0.318***	0.295***	0.036	-0.247	0.101	-0.052	-0.051	-0.017	-0.028	0.121***
A154
Rs	8.46	8.92	9.25	8.17	9.88	8.79	9.10	7.48	8.41	9.68
He	0.796	0.830	0.837	0.841	0.854	0.788	0.778	0.736	0.800	0.807
Fis	0.406***	0.274***	0.194***	0.243***	0.252***	0.08	0.194***	0.016	-0.126*	0.203***
2C157
Rs	5.55	4.83	4.82	5.99	4.70	5.32	5.47	5.73	2.25	5.04
He	0.728	0.707	0.657	0.651	0.713	0.743	0.702	0.778	0.505	0.687
Fis	0.074	0.058	-0.067	-0.102	-0.017	0.044	0.079	-0.049	0.211	0.046
F56
Rs	9.89	9.33	10.56	10.06	10.06	9.61	10.02	7.80	4.56	9.36
He	0.904	0.890	0.918	0.900	0.903	0.898	0.903	0.847	0.561	0.858
Fis	0.07	0.059	0.08	-0.117	0.179***	0.054	0.116*	0.050	0.409***	0.131***
B115
Rs	8.29	8.03	7.32	6.99	6.92	7.63	6.92	7.98	3.49	7.23
He	0.857	0.852	0.843	0.723	0.831	0.854	0.824	0.859	0.395	0.782
Fis	0.084	0.091	0.006	-0.179	-0.057	-0.021	0.227	-0.052	0.074	0.089***
F41
Rs	12.53	12.96	12.83	12.41	12.49	12.42	12.54	12.62	8.47	12.62
He	0.945	0.947	0.947	0.942	0.944	0.943	0.943	0.944	0.755	0.923
Fis	0.028	-0.001	0.038	-0.064	0.023	-0.033	-0.061	-0.005	0.007	0.022
1F43
Rs	6.25	7.16	7.12	4.00	7.06	6.37	7.27	7.52	8.50	7.35
He	0.768	0.793	0.787	0.768	0.836	0.821	0.832	0.846	0.874	0.814
Fis	0.023	0.209*	-0.052	-0.182	0.080	0.064	0.176***	0.115*	-0.008	0.081***
1G13
Rs	6.75	7.54	6.18	6.33	6.82	6.36	6.06	6.27	4.68	6.45
He	0.796	0.827	0.773	0.743	0.790	0.784	0.753	0.780	0.657	0.767
Fis	0.125	0.142*	-0.057	-0.128	-0.068	-0.186	-0.063	0.031	-0.014	-0.008
All loci
Rs	8.73	8.88	8.84	8.52	8.83	8.50	8.28	8.10	5.43	8.63
He	0.840	0.849	0.840	0.805	0.850	0.845	0.822	0.826	0.594	0.808
Fis	0.128***	0.122***	0.044	-0.063*	0.075***	0.026	0.068***	0.029	0.098***	0.097***

Rs: Allele richness; He: Nei's unbiased estimate of expected heterozygosity [28]. All loci/All samples: mean values across loci/populations; *P < 0.05, **P < 0.01 and ***P < 0.001 (single test level); In bold: significant (P < 0.05) heterozygote deficits according to exact tests against Hardy-Weinberg proportions after correction for multiple testing by the sequential Bonferroni procedure [39]; Fis was calculated according to [30]; In parenthesis: sample size. B. Faso: Burkina Faso, Ivory C.: Ivory Coast, DRC: Democratic Republic of Congo.

Back to article page

ISSN: 1475-2875

Contact us

Submission enquiries: journalsubmissions@springernature.com