Table 1 The SNP set used to investigate the LTA/TNF/LTB locus.
Map Number | db SNP rs | SNP Location | Gene | Role | Polymorphic |
|---|---|---|---|---|---|
1 | rs2857602 | chr6:31641357 | LTA | Promoter | Yes |
2 | rs2844486 | chr6:31641849 | LTA | Promoter | No |
3 | rs3131637 | chr6:31643053 | LTA | Promoter | Yes |
4 | rs2844484 | chr6:31644203 | LTA | Promoter | Yes |
5 | rs2844483 | chr6:31644775 | LTA | Promoter | Yes |
6 | rs2009658 | chr6:31646223 | LTA | Promoter | Yes |
7 | rs4647191 | chr6:31646617 | LTA | Promoter | No |
8 | rs2844482 | chr6:31647746 | LTA | Promoter | Yes |
9 | rs2071590 | chr6:31647747 | LTA | Promoter | Yes |
10 | rs1800683 | chr6:31648050 | LTA | Promoter | Yes |
11 | rs2239704 | chr6:31648120 | LTA | Exon | Yes |
12 | rs909253 | chr6:31648292 | LTA | Intron (boundary) | Yes |
13 | rs2857713 | chr6:31648535 | LTA | Coding exon | Yes |
14 | rs3093543 | chr6:31648736 | LTA | Coding exon | No |
15 | rs1041981 | chr6:31648763 | LTA | Coding exon | Yes |
16 | rs1799964 | chr6:31650287 | LTA | 3' UTR | Yes |
17 | rs1799724 | chr6:31650461 | LTA | 3' UTR | Yes |
18 | rs1800750 | chr6:31650942 | TNF | Promoter | No |
19 | rs1800629 | chr6:31651010 | TNF | Promoter | No |
20 | rs361525 | chr6:31651080 | TNF | Promoter | No |
21 | rs3179060 | chr6:31651651 | TNF | Coding exon | No |
22 | rs3093661 | chr6:31651737 | TNF | Intron (boundary) | No |
23 | rs1800610 | chr6:31651806 | TNF | Intron | Yes |
24 | rs3093662 | chr6:31652168 | TNF | Intron | No |
25 | rs4645843 | chr6:31652541 | TNF | Coding exon | No |
26 | rs1800620 | chr6:31652570 | TNF | Intron (boundary) | No |
27 | rs3093664 | chr6:31652621 | TNF | Intron (boundary) | No |
28 | rs1800618 | chr6:31652897 | TNF | Coding exon | No |
29 | rs11574936 | chr6:31653172 | TNF | Coding exon | No |
30 | rs3093668 | chr6:31654474 | TNF | 3' UTR | No |
31 | rs3091257 | chr6:31654829 | TNF | 3' UTR | Yes |
32 | rs769178 | chr6:31655493 | LTB | 3' UTR | Yes |
33 | rs769177 | chr6:31655590 | LTB | 3' UTR | Yes |
34 | rs2229699 | chr6:31656835 | LTB | Exon | No |
35 | rs1052248 | chr6:31664560 | LST1a | Exon | Yes |