A member of the Plasmodium falciparum PHIST family binds to the erythrocyte cytoskeleton component band 4.1
© Parish et al.; licensee BioMed Central Ltd. 2013
Received: 2 March 2013
Accepted: 30 April 2013
Published: 11 May 2013
Plasmodium falciparum parasites export more than 400 proteins into the cytosol of their host erythrocytes. These exported proteins catalyse the formation of knobs on the erythrocyte plasma membrane and an overall increase in erythrocyte rigidity, presumably by modulating the endogenous erythrocyte cytoskeleton. In uninfected erythrocytes, Band 4.1 (4.1R) plays a key role in regulating erythrocyte shape by interacting with multiple proteins through the three lobes of its cloverleaf-shaped N-terminal domain. In P. falciparum- infected erythrocytes, the C-lobe of 4.1R interacts with the P. falciparum protein mature parasite-infected erythrocyte surface antigen (MESA), but it is not currently known whether other P. falciparum proteins bind to other lobes of the 4.1R N-terminal domain.
In order to identify novel 4.1R interacting proteins, a yeast two-hybrid screen was performed with a fragment of 4.1R containing both the N- and α-lobes. Positive interactions were confirmed and investigated using site-directed mutagenesis, and antibodies were raised against the interacting partner to characterise it’s expression and distribution in P. falciparum infected erythrocytes.
Yeast two-hybrid screening identified a positive interaction between the 4.1R N- and α-lobes and PF3D7_0402000. PF3D7_0402000 is a member of a large family of exported proteins that share a domain of unknown function, the PHIST domain. Domain mapping and site-directed mutagenesis established that it is the PHIST domain of PF3D7_0402000 that interacts with 4.1R. Native PF3D7_0402000 is localized at the parasitophorous vacuole membrane (PVM), and colocalizes with a subpopulation of 4.1R.
The function of the majority of P. falciparum exported proteins, including most members of the PHIST family, is unknown, and in only a handful of cases has a direct interaction between P. falciparum-exported proteins and components of the erythrocyte cytoskeleton been established. The interaction between 4.1R and PF3D7_0402000, and localization of PF3D7_0402000 with a sub-population of 4.1R at the PVM could indicate a role in modulating PVM structure. Further investigation into the mechanisms for 4.1R recruitment is needed.
PF3D7_0402000 was identified as a new binding partner for the major erythrocyte cytoskeletal protein, 4.1R. This interaction is consistent with a growing body of literature that suggests the PHIST family members function by interacting directly with erythrocyte proteins.
Intraerythrocytic Plasmodium falciparum parasites extensively remodel their host cells. As the parasite matures the erythrocyte becomes more rigid, loses its biconcave shape for a more spherocytic one, and small electron dense protrusions, known as knobs, form on the surface. These modifications enable the infected erythrocyte to adhere to and block the microvasculature and microcapillaries, which in turn contributes to specific complications such as cerebral and placental malaria[2, 3]. Plasmodium falciparum achieves these massive changes in erythrocyte structure by exporting proteins into the erythrocyte cytosol, some of which interact with components of the host cytoskeleton and plasma membrane. Only a few of these exported proteins have been studied in detail, such as knob-associated histidine rich protein (KAHRP), an essential structural component of knobs that secure the major cytoadherence ligand P. falciparum erythrocyte membrane protein 1 (PfEMP1) to the erythrocyte cytoskeleton through interactions with spectrin and actin[4–6], and mature parasite infected erythrocyte surface antigen (MESA), which binds to the erythrocyte cytoskeleton associated protein Band 4.1, also known as 4.1R[7, 8].
For the majority of the more than 400 P. falciparum proteins that contain an export motif, referred to as the Plasmodium Export Element (PEXEL), little is know about their function[3, 9, 10]. This includes a group of 71 exported proteins that share a conserved domain of four alpha helices in tandem, termed the Plasmodium helical interspersed subtelomeric (PHIST) domain. PHIST domain-containing proteins can subdivided into three groups, PHISTa, PHISTb, and PHISTc, according to the position of one or two conserved tryptophans in the PHIST domain. Several genes encoding PHIST proteins have been knocked out as part of a large-scale screen for exported protein function, and some of these knockouts showed a decrease in erythrocyte rigidity, implying that at least some PHIST proteins may play a role in modulating the erythrocyte cytoskeleton. One PHISTb family member, ring infected surface antigen (RESA), is known to interact directly with the erythrocyte cytoskeleton by binding to spectrin tetramers, resulting in increased resistance to shear stress and thermal damage, while another binds to the C-terminal tail of PfEMP1 but in the majority of cases no binding partner has been identified.
4.1R is involved in maintaining the biconcave shape, elasticity, and mechanical stability of human erythrocytes, and defects in 4.1R are one cause of hereditary erythrocyte elliptocytosis[15, 16]. 4.1R is a member of a family of proteins that contain an N-terminal FERM domain, which regulates local cell shape by acting as a coordinator for protein-protein interactions. Other FERM domain containing proteins, such as Ezrin, Radixin and Moesin, cross-link actin to the cytoplasmic tails of CD43, CD44, and ICAM-1 and have been implicated in regulation of cellular protrusions such as microvilli[18, 19]. The 4.1R FERM domain interacts with erythrocyte membrane proteins Band 3, Glycophorin C and p55 through its N-, α- and C-lobes, respectively, linking them to the actin-spectrin network, which is bound by the 4.1R C-terminal domain[20–22].
Given the critical regulatory role that the 4.1R FERM domain plays in uninfected erythrocytes, it is not surprising that P. falciparum proteins also bind to it, and the C-lobe of the 4.1R FERM domain is recognized by MESA[23, 24]. To test the hypothesis that the other lobes of the 4.1R FERM domain are also bound by exported P. falciparum proteins, a yeast two-hybrid screen of a P. falciparum cDNA library was performed using the N- and α- lobes of the 4.1R FERM domain as bait. This fragment of 4.1R interacted with PF3D7_0402000, an uncharacterized member of the PHISTa family. The 4.1R-PF3D7_0402000 interaction was mapped to the single amino acid level using the yeast two-hybrid system and visualized by immunofluorescence in P. falciparum- infected erythrocytes.
Plasmodium falciparum culture
Plasmodium falciparum 3D7 strain parasites were cultured in O + human erythrocytes and serum (purchased from Interstate Blood Bank) as described previously and synchronized by application of 5% sorbitol during the ring stages. Use of human erythrocytes and serum for culture of P. falciparum was approved by University of Alabama at Birmingham Institutional Review Board.
Yeast two-hybrid screen
The Matchmaker GAL4 Two-Hybrid System 3 (Clontech) was used for yeast two-hybrid screens and analysis. A P. falciparum cDNA library containing activation domain fusions with fragments of P. falciparum proteins was kindly provided by Dr Lawrence Bergman (Drexel University). The 4.1R bait plasmid was made by cloning a fragment of the FERM domain of 4.1R (forward primer 5′-GGAATTCATGCACTGCAAGGTTTCTTTGTTGG-3′, reverse primer 5′- CGGGATCCTTAATGAAGATCAACTCCATAC-3′) into pGBKT7. The bait plasmid was transformed into yeast strain AH109, which was subsequently transformed with the P. falciparum cDNA-activation domain fusion library. Screening was performed by plating double transformants onto low stringency plates (−Leu/-Trp/-His) then replica plating onto high stringency plates (−Leu/-Trp/-His/-Ade) after four days growth. Activation domain plasmids were then rescued from all colonies that grew at high stringency, and retransformed into the original bait strain, as well as a strain transformed with an empty pGBKT7 vector, to test for plasmid independence and auto-activation.
Yeast two-hybrid interaction validation and mapping
In order to recapitulate the interaction observed in the yeast-two-hybrid screen, a fragment of PF3D7_0402000 was cloned into pGADT7 (forward primer 5′- GGAATTCGGTAATAAGGAAGATAACCAGG-3′, reverse primer 5′- GGGGATCCTTAACCTCCTTGTTTTATATTTTGC-3′). Once the 4.1R-PF3D7_0402000 interaction was confirmed, a series of deletion and point mutation constructs of PF3D7_0402000 were made. The positions of the deletions and mutations are described in the text, and were made using PCR primers as follows: ΔND1 construct (forward primer 5′-GGAATTCGAAAAGATATGGAATCATGCCG-3′, reverse primer 5′- GGGGATCCTTAACCTCCTTGTTTTATATTTTGC-3′), ΔCD1 construct (forward primer 5′- GGAATTCGGTAATAAGGAAGATAACCAGG-3′, reverse primer 5′-GTGGATCCTTAAGTATAATCATTTTCATGAAC-3′), ΔND3 (forward primer 5′-GGAATTCAAAGAACAAATGAAAAATTTAG-3′, reverse primer 5′-GGGGATCCTTAACCTCCTTGTTTTATATTTTGC-3), PHIST (forward primer 5′- GGGAATTCATGTTAAGTCAGGACTATAATGAT-3′ reverse primer 5′-GGGGATCCTTAGTCTATAGGAATTTCCGTAG-3′). Subfragments of the PF3D7_0402000 PHIST domain were created as follows: PHISTΔC1 (forward primer 5′-GGGAATTCATGCCCCGAAACGATATGGAAAAGATATGG-3′, reverse primer 5′-GGGGATCCTTAGTCTATAGGAATTTCCGTAG-3′), PHISTΔC4 (forward primer 5′- GGGAATTCATGTTAAGTCAGGACTATAATGAT-3′, reverse primer 5′-GGGGATCCTTAAGGGTCTTTATCAAGTAGTTC-3′), PHISTΔC1C4 (forward primer 5′-GGGAATTCATGCCCCGAAACGATATGGAAAAGATATGG-3′, reverse primer 5′ -GGGGATCCTTAAGGGTCTTTATCAAGTAGTTC-3′). Mutation of the conserved W residue within the PF3D7_0402000 PHIST domain was completed by PCR sewing (forward primer 5′GGGAATTCATGCAGTTAACAAAAGAAGAATTATATG-3′, and reverse primer 5′-GGGGATCCTTAGTCTATAGGAATTTCCGTAG-3′, internal forward primer 5′- AACGATATGGAAAAGATAGCTAATCATGCCGTTAAAACA-3′ and internal reverse primer 5′- TGTTTTAACGGCATGATTAGCTATCTTTTCCATATCGTT-3′). The PHIST domain from another PHIST family member was also cloned into pGADT7 as a control, using primers as follows: PF3D7_1253100 (forward primer 5′- GGGAATTCATGTTAAGTCAGGACTATAATGAT-3′, reverse primer 5′-GGGGATCCTTATTTTAATGAAAGAGTGTCC-3′).
All PF3D7_0402000 and PF3D7_1253100 constructs were cloned into pGADT7 and tested for interaction with the 4.1R bait plasmid in yeast strain AH109 at both medium (−Leu/-Trp/-His plates) and high stringency (−Leu/-Trp/-His/-Ade). Critical interactions were quantified by transforming the 4.1R bait and PF3D7_0402000 interacting plasmid into yeast strain Y187 (Clontech) and measuring β-galactosidase activity using the Pierce yeast β-galactosidase assay kit as directed by manufacturer instructions. All β-galactosidase assays were performed in triplicate.
Expression of 4.1R and PF3D7_0402000 for production of polyclonal antisera
A fragment of human 4.1R was cloned from cDNA into the expression vector pRSETB (forward primer 5′-GAAGATCTATGCACTGCAAGGTTTCTTTGTTGG-3′, reverse 5′-CGGGATCCTTAATGAAGATCAACTCCATAC-3′) and a fragment of PF3D7_0402000 was cloned into pRSETA (forward 5′-CGGGATCCGGATAAATATGAAGGATATGCTGC-3′, reverse 5′-AACTGCAGTTAACCTCCTTGTTTTATATTTTGC-3′). Both plasmids were transformed into Escherichia coli BL21-DE3 pLysS. Recombinant proteins were expressed as hexa-his fusions and purified using either a Hi-Trap Chelating HP column (Amersham Biosciences) for the 4.1R fragment, or Nickel-NTA affinity agarose beads (Qiagen) for the PF3D7_0402000 fragment. The purified recombinant protein was then used to immunize both rabbits and rats (Cocalico Biologicals, Inc). PF3D7_0402000 rabbit antisera was affinity purified by coupling the purified hexa-his fusion protein to Hi-Trap NHS-activated beads (Amersham Biosciences), and passing the rabbit antisera over a column containing the NHS-activated beads. After extensive washing with 1X PBS, affinity-purified antibodies were eluted from the column with low pH buffer (0.1 M glycine, 0.5 M NaCl, pH 2.5–2.8) directly into a neutralization buffer (0.1 M Tris, pH 8.8) and dialysed for 24 hours against 1× PBS.
SDS PAGE and Western blots
Parasite SDS lysates were made by resuspending P. falciparum-infected erythrocytes (1–3 × 108 parasites/ml) in a 1× SDS sample buffer with 5% β-mercaptoethanol. Triton X100 extracts were made by resuspending P. falciparum infected erythrocytes (3 × 108 parasites/ml) in an equal volume of 1% Triton X100 in PBS. After centrifugation, the supernatant was saved as the Triton soluble fraction and the pellet was washed three times in 1% Triton X100 in PBS. The pellet was resuspended in a 1× SDS sample buffer with 5% β-mercaptoethanol and labelled as the Triton X100 insoluble fraction. SDS lysates or Triton X100 extracts were loaded onto and run on 12% polyacrylamide gels and then transferred to nitrocellulose membranes. Membranes were probed with primary antibodies as described, followed by HRP-conjugated secondary sera (anti-rabbit or anti-rat), and visualized using enhanced chemoluminescence (ECL, Amersham Biosciences).
Air-dried thin smears of P. falciparum were either directly probed with anti-4.1R, anti-PF3D7_0402000, and/or PfSERA5, or were fixed with an ice-cold 50% acetone/50% methanol solution and washed with 1× PBS before probing with the appropriate primary antisera. Secondary antisera (Molecular Probes) labeled with a fluorophore were used for visualization on an Olympus BX60 fluorescence microscope equipped with a Diagnostic Instruments Spot RT monochrome camera. All images were merged with Adobe Photoshop 5.0. Anti-PfSERA5 was a kind gift from Dr Brendan Crabb.
The 4.1R FERM domain interacts with PF3D7_0402000 in a yeast two-hybrid screen
A fragment of the 4.1R FERM domain containing the N- and α-lobes was used as the bait in a yeast two-hybrid screen of a P. falciparum cDNA library (a kind gift from Dr Lawrence Bergman, Drexel University). Screening was performed in the yeast strain AH109 and transformants were originally plated at low stringency (−Leu/-Trp/-His), then transferred to high stringency plates (−Leu/-Trp/-His/-Ade) after four days of growth. More than 1 × 106 colonies were screened and only nine grew on high stringency -Leu/-Trp/-His/-Ade plates. The plasmids from all nine positive colonies were isolated and retransformed with either the original 4.1R bait plasmid or an empty binding domain vector, pGBKT7, to test for plasmid independence and auto-activation. Two of the nine plasmids isolated from the screen did not recapitulate the growth on –Leu/-Trp/-His/-Ade plates and another three recapitulated the phenotype with the empty pGBKT7 vector, suggesting they were causing auto-activation.
PF3D7_0402000 interacts with 4.1R through its PHIST domain
PF3D7_0402000 encodes a 50kDa protein that is predicted to contain a hydrophobic TMD/anchor sequence, a P. falciparum export motif, and a PHIST domain (Figure 1). PHIST domains define a family of 71 P. falciparum-exported proteins and consist of four tandemly arrayed alpha helices. The presence and location of two conserved tryptophan residues within the PHIST domain has been used to subdivide the PHIST family into three subfamilies. PF3D7_0402000 is a member of the PHISTa sub-family, which contains 23 members and unlike other PHIST subfamilies appears to be P. falciparum specific. Following the PF3D7_0402000 PHIST domain is a series of repeated low-complexity regions at the C-terminal end, which is absent from both interacting plasmids isolated from the library.
In order to define the minimal domain of PF3D7_0402000 that interacts with 4.1R, a series of smaller fragments of PF3D7_0402000 were cloned into pGADT7 and tested for interaction with the 4.1R bait vector on high stringency plates. When a portion of the C-terminal end of the library plasmid 1 was deleted, (ΔC), no growth was observed on Leu/-Trp/-His/-Ade– plates, suggesting this region is necessary for the PF3D7_0402000/4.1R interaction (amino acids 249–325). Deletion of an N-terminal fragment from the same plasmid, (ΔN1), also inhibited interaction with 4.1R, whereas a smaller N-terminal deletion, (ΔN3), allowed growth on both –Leu/-Trp/-His/and –Leu/-Trp/-His/-Ade plates, suggesting that this region is dispensable for interaction with 4.1R (Figure 1).
These preliminary deletions suggested that it may be the PHIST domain of PF3D7_0402000 that interacts with 4.1R, as the PHIST domain is largely preserved in all the deletion constructs that grew on high stringency plates. To test this hypothesis, the entire PHIST domain of PF3D7_0402000 (amino acids 160–300) was cloned into pGADT7 and tested for interaction with the 4.1R-bait plasmid. The PF3D7_0402000 PHIST domain alone was sufficient for interaction with 4.1R, as growth was observed on both –Leu/-Trp/-His and –Leu/-Trp/-His/-Ade plates (PF3D7_0402000-PHIST; Figure 1). The interaction between the PF3D7_0402000 PHIST domain and 4.1R is specific, as the PHIST domain from another PHISTa family member, PF3D7_1253100, was not able to interact with the 4.1R bait plasmid (not shown).
The conserved tryptophan in the PF3D7_0402000 PHIST domain is necessary for interaction with 4.1R
To test whether all four PHIST helices are necessary for PF3D7_0402000 binding to 4.1R, the first and fourth helices were deleted, both alone and together, from the PHIST binding domain construct. Deletion of either coil 1 or coil 4 of the PHIST domain individually (PHISTΔC1 and PHISTΔC4) or both helices together (PHISTΔC1C4), did not completely eliminate the interaction with 4.1R as all three constructs allowed growth on both –Leu/-Trp/-His and –Leu/-Trp/-His/-Ade plates (Figure 1). However, when β-galactosidase assays were performed it became apparent that the full PHIST domain was needed for maximal interaction with 4.1R. Deletion of both coils 1 and 4 together, or coil 4 alone, completely eliminated β-galactosidase activity, while deletion of coil 1 had only minimal β-galactosidase activity (Figure 1). Taken together, the results suggest that neither coil 1 nor coil 4 are absolutely required for interaction with 4.1R, but the full PHIST domain is required for maximal interaction as determined by β-galactosidase assays.
PF3D7_0402000 is expressed at the parasitophorous vacuole membrane
Expression of PF3D7_0402000 was detected in trophozoite and schizont extracts, but not early ring stage extracts or in uninfected erythrocytes (Figure 3A), consistent with published P. falciparum microarray data, which show peak expression of PF3D7_0402000 in 3D7 at approximately 24 hours[29, 30]. To determine the intracellular location of PF3D7_0402000, affinity-purified anti-PF3D7_0402000 antibodies were used in immunofluorescence experiments. Air-dried smears of 3D7 parasites were co-stained with specific antibodies against PF3D7_0402000 and PfSERA5. A significant portion of PF3D7_0402000 colocalized with PfSERA5 (Figure 3B), suggesting that PF3D7_0402000 is a PVM protein.
A sub-population of 4.1R colocalizes with PF3D7_0402000
During the intraerythrocytic life cycle of P. falciparum, the parasite is predicted to export between 400–600 proteins into the erythrocyte cytosol, based on the presence of a motif (termed PEXEL) that is required for the export of many known exported proteins[9, 10]. The function of many of these exported proteins is unknown. PfEMP1, KAHRP, and MESA are all P. falciparum-exported proteins that interact with the erythrocyte cytoskeleton and play a role in changing the structure of the erythrocyte membrane and cytoskeleton. The PHIST proteins, originally identified through searching the P. falciparum genome for PEXEL-containing proteins, may play a similar role, as knockouts of several PHIST family members show a decrease in erythrocyte rigidity. In this study, one member of the PHIST family, PF3D7_0402000, was shown to interact with the FERM domain of 4.1R in a yeast two-hybrid screen. Formal confirmation of the interaction by co-immunoprecipitation was not possible due to the insolubility of 4.1R, but it should be pointed out that a complex between MESA and 4.1R has not been co-immunoprecipitated from infected erythrocytes either, presumably for the same reason. However PF3D7_0402000 colocalizes with a subpopulation of 4.1R, supporting an interaction in vivo.
How could only a subpopulation of 4.1R be recruited to the PVM? Interestingly, increased phosphorylation of 4.1R has been observed in P. falciparum-infected erythrocytes,[31, 32]. Phosphorylation of 4.1R has been shown to weaken its affinity for glycophorin C, actin, and spectrin and takes place sometime between early ring and early trophozoite stages. It is possible that phosphorylation, or some other post-translational modification event that occurs in P. falciparum- infected erythrocytes, divides 4.1R into two distinct populations: one that remains associated with erythrocyte cytoskeleton and one that dissociates from the erythrocyte cytoskeleton and is available to interact with PF3D7_0402000 at the PVM. This model is clearly hypothetical, but should be readily testable. Relocalization of erythrocyte cytoskeleton components to the PVM in P. falciparum-infected erythrocytes is not without precedent. Erythrocytes contain a class II myosin, which also appears to partially relocalize around the PVM (31). Moreover, it has been shown that 4.1R can bind to this class II myosin through its spectrin and actin-binding domain. Thus, it is possible that relocalized 4.1R binds and interacts with relocalized myosin as well as PF3D7_0402000 at the PVM.
The PVM is a dynamic membrane, which expands as the parasite divides and increases in size inside the erythrocyte. Given the role of 4.1R in maintaining structure at the erythrocyte surface, the presence of both 4.1R and myosin at the PVM is clearly consistent with a role in maintaining the stability of the PVM during this expansion process. It is also possible that 4.1R at the PVM plays a role in protein transport. Both the tubovesicular network, which consists of threadlike projections of the PVM that extend into the erythrocyte cytosol, and the formation of Maurer’s clefts, which may bud from the PVM[35, 36], are modifications of the PVM. Other FERM domain-containing proteins, such as ezrin, radixin and moeisin, promote cellular protrusions such as microvilli[18, 19]. 4.1R could perform a similar function at the PVM and be involved directly in TVN and/or Maurer’s cleft formation and budding, perhaps by cross-linking the PVM with other structural components, whether host or parasite derived. These hypothetical roles for 4.1R at the PVM remain to be tested.
The PHIST domain and PHIST family proteins were originally identified through bioinformatic approaches based on conserved structural features. The identification of an interaction between the PHIST domain of PF3D7_0402000 and 4.1R allowed direct testing of whether the bioinformatic parameters used to define the PHIST families are functionally relevant. While neither the first or fourth helix or the conserved tryptophan residue in the PF3D7_0402000 PHISTa domain were absolutely necessary for interaction with 4.1R, the full PHIST domain and the conserved tryptophan were all required for a highly stringent interaction as measured by β-galactosidase activity. The broad outlines of the PHIST domain described by bioinformatics do therefore appear to have functional relevance. Knockout of several PHIST family members shows a decrease in erythrocyte rigidity. Given the extensive remodelling of the erythrocyte cytoskeleton that occurs after infection by the P. falciparum parasite, it would seem reasonable to hypothesize that the PHIST domain has evolved to bind directly with an array of endogenous erythrocyte proteins, including components of the cytoskeleton, with individual PHIST domain proteins recognizing specific, and probably overlapping, targets. The PHIST family may therefore represent a central front in the parasite-host interactions that drive the successful colonization of human erythrocytes by P. falciparum parasites.
We thank Dr Brendan Crabb for the anti-PfSERA5 antibodies and Dr Lawrence Bergman for the P. falciparum cDNA yeast two-hybrid library. This work was supported by National Institutes of Health grant R03 AI064849.
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