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Table 3 Polymorphisms genotyped using SEQUENOM® iPLEX®

From: Host candidate gene polymorphisms and clearance of drug-resistant Plasmodium falciparum parasites

Alternative Name* rsnumber gene chr coord ancestral/reference allele derived allele
  rs1803632 GBP7 1 89582690 G C
Duffy - FyA/FyB rs2814778 DARC 1 159174683 T C
  rs2179652 RGS2 1 192769826   
  rs3024500 IL10 1 206940831 G A
IL10-1082 rs1800896 IL10 1 206946897 T C
IL10-3533 rs1800890 IL10 1 206949365 A T
McC (McCoy) rs17047660 CR1 1 207782856 A G
SI (Swain-Lagley) rs17047661 CR1 1 207782889 A G
IL1A G4845T rs17561 IL1A 2 113537223 C A
IL1B A2 rs1143634 IL1B 2 113590390 G A
  rs708567 IL17RE 3 9960070 C T
  rs352140 TLR9 3 52231737   
  rs187084 TLR9 3 52261031 G A
  rs6780995 IL17RD 3 57138419 G A
  rs4833095 TLR1 4 38799710 C T
  rs5743611 TLR1 4 38800214 C G
  rs5743810 TLR6 4 38830350 G T
  rs5743809 TLR6 4 38830514 A G
  rs1801033 C6 5 41199959 T G
  rs2706384 IRF1 5 131826880 G T
  rs20541 IL13 5 131995964 G A
IL-4-589 rs2243250 IL4 5 132009154 C T
LTA +77 rs2239704 LTA 6 31540141 C A
LTA NCO1 rs909253 LTA 6 31540313 A G
TNFa -1031 rs1799964 TNF 6 31542308 T C
TNF -376 rs1800750 TNF 6 31542963 G A
TNF -308 rs1800629 TNF 6 31543031 G A
TNF -238 rs361525 TNF 6 31543101 G A
TNF +851 rs3093662 TNF 6 31544189 A G
  rs2242665 CTL4 6 31839309 C T
  rs1555498 IL20RA 6 137325847 C T
  rs2075820 NOD1 7 30492237 C T
CD36 T1264G rs3211938 CD36 7 80300449 T G
CD36 G1439C None assigned CD36 7 80302110 G C
  rs17140229 CFTR 7 117230283 T C
  rs4986790 TLR4 9 120475302 A G
  rs4986791 TLR4 9 120475602 C T
  rs8176746 ABO 9 136131322 G T
HbE rs33950507 HBB 11 5248173 C T
HbS rs334 HBB 11 5248232 T A
  rs7935564 TRIM5 11 5718517 G A
  rs542998 RTN3 11 63487386 T C
  rs2227507 IL22 12 68642647 T C
  rs1012356 IL22 12 68644618 A T
  rs2227491 IL22 12 68646521 T C
  rs2227485 IL22 12 68647713 G A
  rs2227478 IL22 12 68648622 G A
  rs229587 SPTB 14 65263300 T C
  rs2230739 ADCY9 16 4033436 T C
  rs10775349 ADCY9 16 4079823 C G
  rs1805015 IL4R 16 27374180 T C
  rs2535611 ADORA2B 17 15861332 C T
  rs2297518 NOS2 17 26096597 G C
NOS2A -954 (or -969) rs1800482 NOS2 17 26128509 C G
NOS2A -1173 rs9282799 NOS2 17 26128728 G A
NOS2A -1659 rs8078340 NOS2 17 26129212 G A
  rs373533 EMR1 19 6919624 C A
  rs461645 EMR1 19 6919753 A G
ICAM1 codon241 rs1799969 ICAM1 19 10394792 G A
ICAM1 codon469 rs5498 ICAM1 19 10395683 A G
  rs2057291 GNAS 20 57472043   
  rs8386 GNAS 20 57485812 C T
  rs1128127 DERL3 22 24179132 G A
Amelogening_SNP1 None assigned AMELX X 11313735 G** A***
Amelogening_SNP2 None assigned AMELX X 11316106 T** C***
Amelogening_SNP6 None assigned AMELX X 11316650 C** A***
CD40LG -727 rs3092945 CD40LG X 135729609 T C
CD40LG +220 rs1126535 CD40LG X 135730555 T C
G6PD +376 rs1050829 G6PD X 154110298 T C
G6PD +202 rs1050828 G6PD X 154111023 C T
  1. All SNPs are referenced to dbSNP130 and Ensembl build 56.*Alternative name from the literature or from laboratory usage. Ancestral alleles are taken from dbSNP130 and where not identified a reference allele is given based on the human reference sequence on Ensembl. All alleles are with respect to the positive strand. ** Allele represented on the × chromosome and *** Allele represented on the Y chromosome.