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Table 3 Polymorphisms genotyped using SEQUENOM® iPLEX®

From: Host candidate gene polymorphisms and clearance of drug-resistant Plasmodium falciparum parasites

Alternative Name*

rsnumber

gene

chr

coord

ancestral/reference allele‡

derived allele

 

rs1803632

GBP7

1

89582690

G

C

Duffy - FyA/FyB

rs2814778

DARC

1

159174683

T

C

 

rs2179652

RGS2

1

192769826

  
 

rs3024500

IL10

1

206940831

G

A

IL10-1082

rs1800896

IL10

1

206946897

T

C

IL10-3533

rs1800890

IL10

1

206949365

A

T

McC (McCoy)

rs17047660

CR1

1

207782856

A

G

SI (Swain-Lagley)

rs17047661

CR1

1

207782889

A

G

IL1A G4845T

rs17561

IL1A

2

113537223

C

A

IL1B A2

rs1143634

IL1B

2

113590390

G

A

 

rs708567

IL17RE

3

9960070

C

T

 

rs352140

TLR9

3

52231737

  
 

rs187084

TLR9

3

52261031

G

A

 

rs6780995

IL17RD

3

57138419

G

A

 

rs4833095

TLR1

4

38799710

C

T

 

rs5743611

TLR1

4

38800214

C

G

 

rs5743810

TLR6

4

38830350

G

T

 

rs5743809

TLR6

4

38830514

A

G

 

rs1801033

C6

5

41199959

T

G

 

rs2706384

IRF1

5

131826880

G

T

 

rs20541

IL13

5

131995964

G

A

IL-4-589

rs2243250

IL4

5

132009154

C

T

LTA +77

rs2239704

LTA

6

31540141

C

A

LTA NCO1

rs909253

LTA

6

31540313

A

G

TNFa -1031

rs1799964

TNF

6

31542308

T

C

TNF -376

rs1800750

TNF

6

31542963

G

A

TNF -308

rs1800629

TNF

6

31543031

G

A

TNF -238

rs361525

TNF

6

31543101

G

A

TNF +851

rs3093662

TNF

6

31544189

A

G

 

rs2242665

CTL4

6

31839309

C

T

 

rs1555498

IL20RA

6

137325847

C

T

 

rs2075820

NOD1

7

30492237

C

T

CD36 T1264G

rs3211938

CD36

7

80300449

T

G

CD36 G1439C

None assigned

CD36

7

80302110

G

C

 

rs17140229

CFTR

7

117230283

T

C

 

rs4986790

TLR4

9

120475302

A

G

 

rs4986791

TLR4

9

120475602

C

T

 

rs8176746

ABO

9

136131322

G

T

HbE

rs33950507

HBB

11

5248173

C

T

HbS

rs334

HBB

11

5248232

T

A

 

rs7935564

TRIM5

11

5718517

G

A

 

rs542998

RTN3

11

63487386

T

C

 

rs2227507

IL22

12

68642647

T

C

 

rs1012356

IL22

12

68644618

A

T

 

rs2227491

IL22

12

68646521

T

C

 

rs2227485

IL22

12

68647713

G

A

 

rs2227478

IL22

12

68648622

G

A

 

rs229587

SPTB

14

65263300

T

C

 

rs2230739

ADCY9

16

4033436

T

C

 

rs10775349

ADCY9

16

4079823

C

G

 

rs1805015

IL4R

16

27374180

T

C

 

rs2535611

ADORA2B

17

15861332

C

T

 

rs2297518

NOS2

17

26096597

G

C

NOS2A -954 (or -969)

rs1800482

NOS2

17

26128509

C

G

NOS2A -1173

rs9282799

NOS2

17

26128728

G

A

NOS2A -1659

rs8078340

NOS2

17

26129212

G

A

 

rs373533

EMR1

19

6919624

C

A

 

rs461645

EMR1

19

6919753

A

G

ICAM1 codon241

rs1799969

ICAM1

19

10394792

G

A

ICAM1 codon469

rs5498

ICAM1

19

10395683

A

G

 

rs2057291

GNAS

20

57472043

  
 

rs8386

GNAS

20

57485812

C

T

 

rs1128127

DERL3

22

24179132

G

A

Amelogening_SNP1

None assigned

AMELX

X

11313735

G**

A***

Amelogening_SNP2

None assigned

AMELX

X

11316106

T**

C***

Amelogening_SNP6

None assigned

AMELX

X

11316650

C**

A***

CD40LG -727

rs3092945

CD40LG

X

135729609

T

C

CD40LG +220

rs1126535

CD40LG

X

135730555

T

C

G6PD +376

rs1050829

G6PD

X

154110298

T

C

G6PD +202

rs1050828

G6PD

X

154111023

C

T

  1. All SNPs are referenced to dbSNP130 and Ensembl build 56.*Alternative name from the literature or from laboratory usage. ‡Ancestral alleles are taken from dbSNP130 and where not identified a reference allele is given based on the human reference sequence on Ensembl. All alleles are with respect to the positive strand. ** Allele represented on the × chromosome and *** Allele represented on the Y chromosome.
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Malaria Journal

ISSN: 1475-2875

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