Skip to main content

Table 1 Estimates of AMA1 genetic diversity for P. falciparum and P. vivax in PNG

From: Distinct patterns of diversity, population structure and evolution in the AMA1 genes of sympatric Plasmodium falciparum and Plasmodium vivax populations of Papua New Guinea from an area of similarly high transmission

  

P. falciparum

P. vivax

  

Wosera

Madang

Wosera

Madang

Whole ectodomain

n

44

32

41

61

S

56

52

34

36

Ï€ (x 10-3)

14.2

13.4

7.6

8.5

NS

48a

47b

26

29c

SP

1a

1b

8

4c

h

20

12

38

50

Hd

0.92

0.91

0.99

0.99

R S

19

12

38

45

R

45.8

36.6

70.9

66.2

DI

S

36

32

21

23

Ï€ (x 10-3)

25.1

24.5

15.7

17.3

NS

30a

29b

14

16c

SP

1a

1b

7

4c

h

18

12

21

25

Hd

0.92

0.91

0.96

0.95

DII

S

8

8

4

6

Ï€ (x 10-3)

8.3

6.6

2.3

2.6

NS

8

8

4

6

SP

0

0

0

0

h

10

10

5

9

Hd

0.86

0.85

0.59

0.57

DIII

S

7

7

1

1

Ï€ (x 10-3)

14.8

13.7

0.2

1.3

NS

7

7

1

1

SP

0

0

0

0

h

9

8

2

2

Hd

0.86

0.84

0.04

0.25

  1. DI=domain I; DII=domain II; DIII; domain III; n=number of samples; S=number of polymorphic sites; π=nucleotide diversity; NS= number of non-synonymous single nucleotide polymorphisms (SNPs); SP=number of synonymous SNPs; h=number of haplotypes; Hd=haplotype diversity; R S : allelic richness; R: recombination parameter.
  2. aComplex codons not analysed by DnaSP software: 3 codons (292, 293, 294) (301, 302, 303) (304, 305, 306).
  3. bComplex codons not analysed by DnaSP software: 2 codons (292, 293, 294) (301, 302, 303).
  4. cComplex codon not analysed by DnaSP software: 1 codon (550, 551, 552).